Searching journal content for articles similar to Jones 6 (8): 761.

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  1. Method: Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells
    • Arshad H. Khan,
    • Andy Lin,
    • Richard T. Wang,
    • Joshua S. Bloom,
    • Kenneth Lange,
    • and Desmond J. Smith
    Genome Res. October 2020 30: 1458-1467; Published in Advance September 2, 2020, doi:10.1101/gr.262204.120
    ...P, Bruls T, Poras I, Eley L, Gas S, Ruiz P, Wiles MV, Sousa-Nunes R, Kettleborough R, Rana A, et al. 2001. A radiation hybrid transcript map of the mouse . Nat Genet 29: 194–200. doi:10.1038/ng1001-194 ↵Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful...
  2. Research: Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles
    • Xuejing Wang and
    • Gerald Heckel
    Genome Res. June 2024 34: 851-862; Published in Advance July 2, 2024, doi:10.1101/gr.278487.123
    ...selection, and thus, our approach to focus on the consistent overlap between HMM and DBSCAN results to limit the potential impact of false positives. However, the adaptive changes identified in this study are likely only part of the picture of the adaptive evolution of Orkney voles. Higher statistical power...
  3. Research: High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis
    • Yuan Lu,
    • Edward Rice,
    • Kang Du,
    • Susanne Kneitz,
    • Magali Naville,
    • Corentin Dechaud,
    • Jean-Nicolas Volff,
    • Mikki Boswell,
    • William Boswell,
    • LaDeana Hillier,
    • Chad Tomlinson,
    • Kremitzki Milin,
    • Ronald B. Walter,
    • Manfred Schartl,
    • and Wesley C. Warren
    Genome Res. April 2023 33: 557-571; Published in Advance May 5, 2023, doi:10.1101/gr.277434.122
    ...and to progress understanding of genetic incompatibility to disease. In particular, we measured intra- and inter-species divergence and assessed gene expression dysregulation in reciprocal interspecies hybrids among the three species. We found expanded gene families and positively selected genes associated...
  4. Method: Direct detection of natural selection in Bronze Age Britain
    • Iain Mathieson and
    • Jonathan Terhorst
    Genome Res. November/December 2022 32: 2057-2067; Published in Advance October 31, 2022, doi:10.1101/gr.276862.122
    ...powerful. The major advantage of aDNA is the ability to precisely estimate the timing of selection, suggesting a potential hybrid approach using very large present-day data sets to identify nonneutral regions of the and then use aDNA time series to characterize the timing and nature of selection at those...
  5. Research: Genetic variation in radiation-induced cell death
    • Denis A. Smirnov,
    • Lauren Brady,
    • Krzysztof Halasa,
    • Michael Morley,
    • Sonia Solomon,
    • and Vivian G. Cheung
    Genome Res. February 2012 22: 332-339; Published in Advance August 15, 2011, doi:10.1101/gr.122044.111
    ...expression.Cells were harvested prior to radiation and at 2 and 6 h after IR. RNA was extracted from the cells, labeled, and hybridized onto Affymetrix Human U133A 2.0 Arrays. For our genetic analysis, we used a random number generator to determine the order in which the cells were grown and array...
  6. Method: A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes
    • Andy Lin,
    • Richard T. Wang,
    • Sangtae Ahn,
    • Christopher C. Park,
    • and Desmond J. Smith
    Genome Res. August 2010 20: 1122-1132; Published in Advance May 27, 2010, doi:10.1101/gr.104216.109
    ...A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes Andy Lin 1 , Richard T. Wang 1 , Sangtae Ahn 2 , Christopher C. Park 1 and Desmond J. Smith 1 , 3 1 Department of Molecular and Medical...
  7. Research: Population genomics of parallel hybrid zones in the mimetic butterflies, H. melpomene and H. erato
    • Nicola J. Nadeau,
    • Mayté Ruiz,
    • Patricio Salazar,
    • Brian Counterman,
    • Jose Alejandro Medina,
    • Humberto Ortiz-Zuazaga,
    • Anna Morrison,
    • W. Owen McMillan,
    • Chris D. Jiggins,
    • and Riccardo Papa
    Genome Res. August 2014 24: 1316-1333; Published in Advance May 13, 2014, doi:10.1101/gr.169292.113
    ...between subspecies of Heliconius butterflies can be very narrow and are maintained by strong selection acting on color pattern. The comimetic species, H. erato and H. melpomene, have parallel hybrid zones in which both species undergo a change from one color pattern form to another. We use restriction...
  8. RESOURCE: The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences
    • Neil Hukriede,
    • Dan Fisher,
    • Jonathan Epstein,
    • Lucille Joly,
    • Patricia Tellis,
    • Yi Zhou,
    • Brad Barbazuk,
    • Kristine Cox,
    • Laura Fenton-Noriega,
    • Candace Hersey,
    • Jennifer Miles,
    • Xiaoming Sheng,
    • Anhua Song,
    • Rick Waterman,
    • Stephen L. Johnson,
    • Igor B. Dawid,
    • Mario Chevrette,
    • Leonard I. Zon,
    • John McPherson,
    • and Marc Ekker
    Genome Res. December 1, 2001 11: 2127-2132; Published in Advance November 12, 2001, doi:10.1101/gr.210601
    ...The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences Neil Hukriede 1 , 7 , Dan Fisher 2 , 7 , Jonathan Epstein 1 , 7 , Lucille Joly 3 , Patricia Tellis 4 , Yi Zhou 5 , Brad Barbazuk 2 , Kristine Cox 2...
  9. RESEARCH: Estimation of Distances and Map Construction Using Radiation Hybrids
    • William Newell,
    • Stephan Beck,
    • Hans Lehrach,
    • and Andrew Lyall
    Genome Res. May 1, 1998 8: 493-508; doi:10.1101/gr.8.5.493
    ..., and known marker distances and locations are successfully recovered from RH raw data. The method is also applied to publicly available data sets related to the recent transcript map of the human . Radiation hybrid (RH) mapping is a flexible and powerful technique for mapping unique DNA sequences on s...
  10. ARTICLES: Statistical methods for polyploid radiation hybrid mapping.
    • K Lange,
    • M Boehnke,
    • D R Cox,
    • and K L Lunetta
    Genome Res. September 1995 5: 136-150; doi:10.1101/gr.5.2.136
    ...it is possible to incorporate typing errors. The statistical tools discussed here are applied to 14 loci on the short arm of human chromosome 4. Radiation hybrids have proved to be a powerful and convenient method for rapidly mapping marker loci (Cox et al. 1990; Goss and Harris 1975). To date, most radiation...
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