Searching journal content for articles similar to Jin et al. 17 (6): 807.

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  1. Research: TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells
    • Helen M. Rowe,
    • Adamandia Kapopoulou,
    • Andrea Corsinotti,
    • Liana Fasching,
    • Todd S. Macfarlan,
    • Yara Tarabay,
    • Stéphane Viville,
    • Johan Jakobsson,
    • Samuel L. Pfaff,
    • and Didier Trono
    Genome Res. March 2013 23: 452-461; Published in Advance December 10, 2012, doi:10.1101/gr.147678.112
    ...through other factors such as SRY (Peng et al. 2009). Remarkably, TRIM28 and some KRAB-ZFPs are also detected in adult tissues, albeit along exquisitely cell- and stage-specific fashions, where they have become coopted to influence tissue-specific gene regulation (Jakobsson et al. 2008; Bojkowska et al...
  2. Methods: DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression
    • Shintaro Yagi,
    • Keiji Hirabayashi,
    • Shinya Sato,
    • Wei Li,
    • Yoko Takahashi,
    • Tsutomu Hirakawa,
    • Guoying Wu,
    • Naoko Hattori,
    • Naka Hattori,
    • Jun Ohgane,
    • Satoshi Tanaka,
    • X. Shirley Liu,
    • and Kunio Shiota
    Genome Res. December 2008 18: 1969-1978; Published in Advance October 29, 2008, doi:10.1101/gr.074070.107
    ...applied model-based analysis of tiling arrays (MAT) ( Johnson et al. 2006 ). MATscores represent the enrichment of unmethylated fragments and are indicative of the relative methylation status of the HpyCH4IV site. They were visualized using the Integrated Genome Browser (IGB). Intra-genomic comparison can...
  3. LETTER: E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
    • Alina Rabinovich,
    • Victor X. Jin,
    • Roman Rabinovich,
    • Xiaoqin Xu,
    • and Peggy J. Farnham
    Genome Res. November 2008 18: 1763-1777; Published in Advance October 3, 2008, doi:10.1101/gr.080622.108
    ...factors have also shown a low percentage of in vitro-derived consensus motifs in the set of in vivo binding sites. For example, only 13% of POU5F1 (OCT4) binding sites identified using ChIP-chip assays with genomic tiling arrays contain the conventional POU5F1 motif ( Jin et al. 2007 ). Of course...
  4. ARTICLE: A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
    • Xiaoqin Xu,
    • Mark Bieda,
    • Victor X. Jin,
    • Alina Rabinovich,
    • Mathew J. Oberley,
    • Roland Green,
    • and Peggy J. Farnham
    Genome Res. November 2007 17: 1550-1561; Published in Advance October 1, 2007, doi:10.1101/gr.6783507
    ...Green 3 , and Peggy J. Farnham 1 , 4 1 Department of Pharmacology and the Genome Center, University of California-Davis, Davis, California 95616, USA; 2 University of Wisconsin Medical School, Madison, Wisconsin, 53705 USA; 3 NimbleGen Systems Inc...
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