Searching journal content for articles similar to Jiao et al. 33 (5): 779.

Displaying results 1-10 of 17

For checked items

view abstracts
download to citation manager

Select this article
Review: Leveraging the power of long reads for targeted sequencing
- Shruti V. Iyer,
- Sara Goodwin,
- and William Richard McCombie
Genome Res. November 2024 34: 1701-1718; doi:10.1101/gr.279168.124
..., so too have methods for target enrichment using these platforms. Targeted long-read sequencing methods are powerful tools for studying genomic regions not readily accessible via short-read approaches. Targeted long reads provide enrichment for ROIs while maintaining variant positions within fragments...
OPEN ACCESS ARTICLE
Select this article
Mini-Review: Evolution of genome-wide methylation profiling technologies
- Carolina Montano and
- Winston Timp
Genome Res. April 2025 35: 572-582; doi:10.1101/gr.278407.123
...in particular genes (Grafodatskaya et al. 2013; Barbosa et al. 2018). Illumina's Infinium MethylationEPIC array, which targets nearly a million methylation sites, is the most widely used platform for this analysis. Microarray methylation data, e.g., The Cancer Genome Atlas (TCGA) Research Network...
OPEN ACCESS ARTICLE
Select this article
Method: Precise and efficient nucleotide substitution near genomic nick via noncanonical homology-directed repair
- Kazuhiro Nakajima,
- Yue Zhou,
- Akiko Tomita,
- Yoshihiro Hirade,
- Channabasavaiah B. Gurumurthy,
- and Shinichiro Nakada
Genome Res. February 2018 28: 223-230; Published in Advance December 22, 2017, doi:10.1101/gr.226027.117
...damage-dependent ubiquitination by OTUB2 supports the DNA repair pathway choice. Mol Cell 53: 617–630. ↵Komor AC, Kim YB, Packer MS, Zuris JA, Liu DR. 2016. Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage. Nature 533: 420–424. ↵Maeder ML, Gersbach CA. 2016...
Select this article
Method: Targeted chromosomal deletions and inversions in zebrafish
- Ankit Gupta,
- Victoria L. Hall,
- Fatma O. Kok,
- Masahiro Shin,
- Joseph C. McNulty,
- Nathan D. Lawson,
- and Scot A. Wolfe
Genome Res. June 2013 23: 1008-1017; Published in Advance March 11, 2013, doi:10.1101/gr.154070.112
.... Genome Res 19: 1279–1288. Kim E, Kim S, Kim DH, Choi BS, Choi IY, Kim JS. 2012. Precision engineering with programmable DNA-nicking enzymes.Genome Res 22: 1327–1333. LeeHJ, KimE, Kim JS. 2010. Targeted chromosomal deletions in human cells using zinc finger nucleases. Genome Res 20: 81–89. Lee HJ, Kweon J...
Select this article
Perspective: Enabling functional genomics with genome engineering
- Isaac B. Hilton and
- Charles A. Gersbach
Genome Res. October 2015 25: 1442-1455; doi:10.1101/gr.190124.115
...to gene editing in eukaryotes, but have been less widely adopted in the context of functional genomics due to the complexity involved in engineering meganucleases targeted to new sequences. Editing sequences with programmable nucleases Gene targeting based on homologous recombination can introduce...
OPEN ACCESS ARTICLE
Select this article
Resource: An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
- Bernardo J. Clavijo,
- Luca Venturini,
- Christian Schudoma,
- Gonzalo Garcia Accinelli,
- Gemy Kaithakottil,
- Jonathan Wright,
- Philippa Borrill,
- George Kettleborough,
- Darren Heavens,
- Helen Chapman,
- James Lipscombe,
- Tom Barker,
- Fu-Hao Lu,
- Neil McKenzie,
- Dina Raats,
- Ricardo H. Ramirez-Gonzalez,
- Aurore Coince,
- Ned Peel,
- Lawrence Percival-Alwyn,
- Owen Duncan,
- Josua Trösch,
- Guotai Yu,
- Dan M. Bolser,
- Guy Namaati,
- Arnaud Kerhornou,
- Manuel Spannagl,
- Heidrun Gundlach,
- Georg Haberer,
- Robert P. Davey,
- Christine Fosker,
- Federica Di Palma,
- Andrew L. Phillips,
- A. Harvey Millar,
- Paul J. Kersey,
- Cristobal Uauy,
- Ksenia V. Krasileva,
- David Swarbreck,
- Michael W. Bevan,
- and Matthew D. Clark
Genome Res. May 2017 27: 885-896; Published in Advance April 18, 2017, doi:10.1101/gr.217117.116
...-LTR with a characteristic ATCAG target site duplication (TSD). In scaffold_220592_3B, the TSDwas present on either side of the Sabrina_3231 element, while in the BAC-based scaffold Sabrina homology ended in Ns. In the BAC-based assembly, only one side of the disjunction showed alignment similarity to CACTA_3026, whichwas...
OPEN ACCESS ARTICLE
Select this article
PERSPECTIVE: The mouse genome
- Jean Louis Guénet
Genome Res. December 2005 15: 1729-1740; doi:10.1101/gr.3728305
...difficulties encountered for certain genomic segments, such as duplications or highly repeated regions ( Bailey et al. 2004 ). Many of these imperfections are now being corrected, and the latest assembly released by the Mouse Genome Sequencing Consortium (NCBI build 34) has a length of 2.6 Gb, of which about 1...
Select this article
ARTICLE: New Evidence for Genome-Wide Duplications at the Origin of Vertebrates Using an Amphioxus Gene Set and Completed Animal Genomes
- Georgia Panopoulou,
- Steffen Hennig,
- Detlef Groth,
- Antje Krause,
- Albert J. Poustka,
- Ralf Herwig,
- Martin Vingron,
- and Hans Lehrach
Genome Res. June 2003 13: 1056-1066; doi:10.1101/gr.874803
...to investigate whether the human orthologs of a series of single-copy CD/CDY groups on the query chromosome are also found in a specific order and neighborhood on another chromosome (target). To compensate for genomic rearrangements, for example, chromosome inversions, translocations, tandem duplications...
Select this article
Research: A national long-read sequencing study on chromosomal rearrangements uncovers hidden complexities
- Jesper Eisfeldt,
- Adam Ameur,
- Felix Lenner,
- Esmee Ten Berk de Boer,
- Marlene Ek,
- Josephine Wincent,
- Raquel Vaz,
- Jesper Ottosson,
- Tord Jonson,
- Sofie Ivarsson,
- Sofia Thunström,
- Alexandra Topa,
- Simon Stenberg,
- Anna Rohlin,
- Anna Sandestig,
- Margareta Nordling,
- Pia Palmebäck,
- Magnus Burstedt,
- Frida Nordin,
- Eva-Lena Stattin,
- Maria Sobol,
- Panagiotis Baliakas,
- Marie-Louise Bondeson,
- Ida Höijer,
- Kristine Bilgrav Saether,
- Lovisa Lovmar,
- Hans Ehrencrona,
- Malin Melin,
- Lars Feuk,
- and Anna Lindstrand
Genome Res. November 2024 34: 1774-1784; Published in Advance October 29, 2024, doi:10.1101/gr.279510.124
..., Ferguson JM, Pineda SS, Scriba CK, Tchan M, Fung V, Ng K, Cortese A, et al. 2022. Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing. Sci Adv 8: eabm5386. doi:10.1126/sciadv.abm5386 ↵Stranneheim H, Lagerstedt-Robinson K, Magnusson M, Kvarnung...
OPEN ACCESS ARTICLE
Select this article
Research: Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver
- Ullas V. Chembazhi,
- Sushant Bangru,
- Mikel Hernaez,
- and Auinash Kalsotra
Genome Res. April 2021 31: 576-591; Published in Advance March 1, 2021, doi:10.1101/gr.267013.120
...Ullas V. Chembazhi1,5, Sushant Bangru1,2,5, Mikel Hernaez3,4 and Auinash Kalsotra1,2,3 1Department of Biochemistry, University of Illinois, Urbana, Illinois 61801, USA; 2Cancer Center@Illinois, University of Illinois, Urbana, Illinois 61801, USA; 3Carl R. Woese Institute for Genomic Biology...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Jiao et al. 33 (5): 779.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: