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METHODS: Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs
- Zhengyan Kan,
- Eric C. Rouchka,
- Warren R. Gish,
- and David J. States
Genome Res. May 1, 2001 11: 889-900; doi:10.1101/gr.155001
...a practical and powerful strategy for gene prediction. Elucidating gene structure is a complex problem requiring the identification of splice junctions, gene boundaries, and alternative splicing variants. We have developed a software tool, Transcript Assembly Program ( TAP ), to delineate gene structures...
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Methods: A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome
- The Ludwig–FAPESP Transcript Finishing Initiative,
- Mari Cleide Sogayar,
- and Anamaria A. Camargo
Genome Res. July 2004 14: 1413-1423; Published in Advance June 14, 2004, doi:10.1101/gr.2111304
...as for the delineation of gene boundaries and alternatively spliced isoforms. Footnotes [Supplemental material is available online at www.genome.org. The sequence data from this study have been submitted to GenBank under accession nos. CF272536–CF272733.] ↵ 3 Ludwig Institute for Cancer Research...

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