Searching journal content for articles similar to Javasky et al. 28 (10): 1455.

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  1. Research: Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development
    • Hiroto S. Fukushima,
    • Hiroyuki Takeda,
    • and Ryohei Nakamura
    Genome Res. April 2023 33: 572-586; Published in Advance April 28, 2023, doi:10.1101/gr.277577.122
    ...experimentally showed the functional roles of such retained modifications at early stages: (i) H3K27ac premarks promoters during the cleavage stage, and inhibition of histone acetyltransferases disrupts proper patterning of H3K4 and H3K27 methylation at CpG-dense promoters, but does not affect chromatin...
  2. Research: Transcription factor activity and nucleosome organization in mitosis
    • Nicola Festuccia,
    • Nick Owens,
    • Thaleia Papadopoulou,
    • Inma Gonzalez,
    • Alexandra Tachtsidi,
    • Sandrine Vandoermel-Pournin,
    • Elena Gallego,
    • Nancy Gutierrez,
    • Agnès Dubois,
    • Michel Cohen-Tannoudji,
    • and Pablo Navarro
    Genome Res. February 2019 29: 250-260; Published in Advance January 17, 2019, doi:10.1101/gr.243048.118
    .... Yet, mitotic chromatin accessibility does not seem to correlate with mitotic binding, at least in the case of bookmarking by GATA1 in erythroblasts (Kadauke et al. 2012). Moreover, the maintenance of chromatin accessibility does not preclude the possibility that nucleosome positioning in mitotic cells...
  3. Research: CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
    • Marlies E. Oomen,
    • Anders S. Hansen,
    • Yu Liu,
    • Xavier Darzacq,
    • and Job Dekker
    Genome Res. February 2019 29: 236-249; Published in Advance January 17, 2019, doi:10.1101/gr.241547.118
    ...of start sites during mitosis. Third, loss of site-specific CTCF binding was directly demonstrated using CUT&RUN. Histone modifications and histone variants are maintained in mitosis, suggesting a role in bookmarking of active CTCF sites. Finally, live-cell imaging, fluorescence recovery after...
  4. Research: Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
    • Katharine N. Schulz,
    • Eliana R. Bondra,
    • Arbel Moshe,
    • Jacqueline E. Villalta,
    • Jason D. Lieb,
    • Tommy Kaplan,
    • Daniel J. McKay,
    • and Melissa M. Harrison
    Genome Res. November 2015 25: 1715-1726; Published in Advance September 2, 2015, doi:10.1101/gr.192682.115
    ...the patterns of transcription factor binding in vivo (Kaplan et al. 2011; Li et al. 2011). However, the mechanisms that create sites of accessibility are poorly understood. It has been proposed that a special class of transcription factors, termed pioneer factors, binds nucleosomal DNA and increases chromatin...
  5. Research: H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2
    • Carol C.L. Chen,
    • Preeti Goyal,
    • Mohammad M. Karimi,
    • Marie H. Abildgaard,
    • Hiroshi Kimura,
    • and Matthew C. Lorincz
    Genome Res. January 2018 28: 37-51; Published in Advance December 11, 2017, doi:10.1101/gr.224717.117
    ...of actively transcribing genes by EHMT2. Taken together, these observations reveal that H3S10ph may play a general role in restricting the spreading of repressive chromatin in interphase mammalian cells.H3S10ph is a highly conserved histone post-translational modification (PTM); however, the influence...
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