Searching journal content for articles similar to Janiszewski et al. 29 (10): 1659.

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  1. Research: Xist upstream deletion leads to dysregulation of Xist and autosomal gene expression
    • Sudeshna Majumdar,
    • Lakshmi Sowjanya Bammidi,
    • Hemant C. Naik,
    • Avinchal Manhas,
    • Runumi Baro,
    • Akash Kalita,
    • Amlan Jyoti Naskar,
    • Sundarraj Nidharshan,
    • Girija S. Bariha,
    • Dimple Notani,
    • and Srimonta Gayen
    Genome Res. September 2025 35: 1992-2010; Published in Advance August 6, 2025, doi:10.1101/gr.279822.124
    ...and random X inactivation. (A) Schematic representing the linear arrangement of genes across the Xist and Tsix TADs. (B) Diagrammatic representation of hybrid XEN cells derived from a cross between Mus musculus (Mus) and Mus molossinus (Mol) mice. The X Chromosome derived from Mus is the inactive X. (C...
  2. Method: Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing
    • Shilin Zhang,
    • Yichen Wang,
    • Lin Jia,
    • Xue Wen,
    • Zhonghua Du,
    • Cong Wang,
    • Yajing Hao,
    • Dehai Yu,
    • Lei Zhou,
    • Naifei Chen,
    • Jingcheng Chen,
    • Huiling Chen,
    • Hui Zhang,
    • Ilkay Celik,
    • Günhan Gülsoy,
    • Jianjun Luo,
    • Baoming Qin,
    • Xueling Cui,
    • Zhonghui Liu,
    • Songling Zhang,
    • Miguel A. Esteban,
    • Ferhat Ay,
    • Wei Xu,
    • Runsheng Chen,
    • Wei Li,
    • Andrew R. Hoffman,
    • Ji-Fan Hu,
    • and Jiuwei Cui
    Genome Res. September 2019 29: 1521-1532; Published in Advance July 17, 2019, doi:10.1101/gr.244996.118
    ...random control (gCT, middle panel) and in the IgG immunoprecipitation control (IgG, bottom panels). The RNA-seq IGV data also showed that Snhg14 was differentially expressed in reprogramming; there was abundant expression in iPSCs, but almost no expression in fibroblasts (Supplemental Fig. S11). RNA...
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  3. Article: Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
    • Ichiro Hiratani,
    • Tyrone Ryba,
    • Mari Itoh,
    • Joy Rathjen,
    • Michael Kulik,
    • Bernadett Papp,
    • Eden Fussner,
    • David P. Bazett-Jones,
    • Kathrin Plath,
    • Stephen Dalton,
    • Peter D. Rathjen,
    • and David M. Gilbert
    Genome Res. February 2010 20: 155-169; Published in Advance December 1, 2009, doi:10.1101/gr.099796.109
    ...Press; ISSN 1088-9051/10; www..org Genome Research 155 www..org timing and transcription by reversing ESC differentiation, as well as analyzing partially and fully reprogrammed induced pluripotent stem cells (iPSCs) (Maherali et al. 2007). Altogether, we find that 45% of the experiences significant...
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