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LETTER: Analysis of the Cat Eye Syndrome Critical Region in Humans and the Region of Conserved Synteny in Mice: A Search for Candidate Genes at or near the Human Chromosome 22 Pericentromere
- Tim K. Footz,
- Polly Brinkman-Mills,
- Graham S. Banting,
- Stephanie A. Maier,
- M. Ali Riazi,
- Lindsay Bridgland,
- Song Hu,
- Bruce Birren,
- Shinsei Minoshima,
- Nobuyoshi Shimizu,
- HuaQin Pan,
- Thuan Nguyen,
- Fang Fang,
- Ying Fu,
- Linda Ray,
- Hui Wu,
- Steve Shaull,
- Stacey Phan,
- Ziyun Yao,
- Feng Chen,
- Axin Huan,
- Ping Hu,
- Qiaoyan Wang,
- Phoebe Loh,
- Sulan Qi,
- Bruce A. Roe,
- and Heather E. McDermid
Genome Res. June 1, 2001 11: 1053-1070; doi:10.1101/gr.154901
...array of bacterial and P1-based artificial chromosomes (BACs/PACs) ( Johnson et al. 1999 ). A minimal overlapping set of clones from the region now has been sequenced and partially annotated with various ESTs and the genes IL-17R , ATP6E , and BID ( Dunham et al. 1999 ). Here, we report the analysis...
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LETTER: Comparative Genome Sequence Analysis of the Bpa/Str Region in Mouse and Man
- A.-M. Mallon,
- M. Platzer,
- R. Bate,
- G. Gloeckner,
- M.R.M. Botcherby,
- G. Nordsiek,
- M.A. Strivens,
- P. Kioschis,
- A. Dangel,
- D. Cunningham,
- R.N.A. Straw,
- P. Weston,
- M. Gilbert,
- S. Fernando,
- K. Goodall,
- G. Hunter,
- J.S. Greystrong,
- D. Clarke,
- C. Kimberley,
- M. Goerdes,
- K. Blechschmidt,
- A. Rump,
- B. Hinzmann,
- C.R. Mundy,
- W. Miller,
- A. Poustka,
- G.E. Herman,
- M. Rhodes,
- P. Denny,
- A. Rosenthal,
- and S.D.M. Brown
Genome Res. June 1, 2000 10: 758-775; doi:10.1101/gr.10.6.758
...and regulatory element identification ( Hardison et al. 1997 ). Comparative sequencing of a number of regions in mouse and human, including the Btk locus on the mouse and human X chromosomes ( Oeltjen et al. 1997 ), a gene-rich cluster on human 12p13 and mouse 6 ( Ansari-Lari et al. 1998 ), the mnd2 region...
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LETTER: Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters
- Qiang Wu,
- Theresa Zhang,
- Jan-Fang Cheng,
- Youngwook Kim,
- Jane Grimwood,
- Jeremy Schmutz,
- Mark Dickson,
- James P. Noonan,
- Michael Q. Zhang,
- Richard M. Myers,
- and Tom Maniatis
Genome Res. March 1, 2001 11: 389-404; doi:10.1101/gr.167301
...A). The total extent of genomic DNA included in the seven BACs (excluding the overlapping regions) was estimated by pulse-field gel electrophoresis to be ∼1MB. All seven clones were mapped by fluorescence in situ hybridization (FISH) to the 18c region of mouse chromosome 18, which is homologous...
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ARTICLE: Sequence and Comparative Analysis of the Mouse 1-Megabase Region Orthologous to the Human 11p15 Imprinted Domain
- Patrick Onyango,
- Webb Miller,
- Jessica Lehoczky,
- Cheuk T. Leung,
- Bruce Birren,
- Sarah Wheelan,
- Ken Dewar,
- and Andrew P. Feinberg
Genome Res. November 1, 2000 10: 1697-1710; doi:10.1101/gr.161800
...in fetal and adult tissues. Hum. Mol. Genet. 5 : 1743 – 1748 . ↵ Jang W. , Hua A. , Spilson S.V. , Miller W. , Roe B.A. , Meisler M.H. ( 1999 ) Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res. 9 : 53 – 61 . ↵ Koi M. , Johnson L.A. , Kalikin L...
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LETTER: Comparative Sequence Analysis of the X-Inactivation Center Region in Mouse, Human, and Bovine
- Corinne Chureau,
- Marine Prissette,
- Agnès Bourdet,
- Valérie Barbe,
- Laurence Cattolico,
- Louis Jones,
- André Eggen,
- Philip Avner,
- and Laurent Duret
Genome Res. June 1, 2002 12: 894-908; Published in Advance November 21, 2000, doi:10.1101/gr.152902
.... AJ421478 , AJ421479 , AJ421480 , and AJ421481 . Online supplemental data are available at http://pbil.univ-lyon1.fr/datasets/Xic2002/data.html and www..org .] In mammals, dosage compensation of X-linked genes is achieved by the transcriptional silencing of one of the two X chromosomes in the female...
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LETTER: Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map
- Paul Flicek,
- Evan Keibler,
- Ping Hu,
- Ian Korf,
- and Michael R. Brent
Genome Res. January 1, 2003 13: 46-54; doi:10.1101/gr.830003
...G. , Chen Y. , Clark L. , Cox T. , Cuff J. , Curwen V. , Down T. , et al. ( 2002 ) The Ensembl database project. Nucleic Acids Res. 30 : 38 – 41 . ↵ Jang W. , Hua A. , Spilson S.V. , Miller W. , Roe B.A. , Meisler M.H. ( 1999 ) Comparative sequence of human and mouse BAC clones from the mnd2 region...
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LETTER: Long-Range Comparison of Human and Mouse SCL Loci: Localized Regions of Sensitivity to Restriction Endonucleases Correspond Precisely with Peaks of Conserved Noncoding Sequences
- Berthold Göttgens,
- James G.R. Gilbert,
- Linda M. Barton,
- Darren Grafham,
- Jane Rogers,
- David R. Bentley,
- and Anthony R. Green
Genome Res. January 1, 2001 11: 87-97; doi:10.1101/gr.153001
...of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res. 9 : 53 – 61 . ↵ Jareborg N. , Birney E. , Durbin R. ( 1999 ) Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res. 9 : 815 – 824 . ↵ Kallianpur A.R. , Jordan J.E. , Brandt S...
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RESOURCE: PipMaker—A Web Server for Aligning Two Genomic DNA Sequences
- Scott Schwartz,
- Zheng Zhang,
- Kelly A. Frazer,
- Arian Smit,
- Cathy Riemer,
- John Bouck,
- Richard Gibbs,
- Ross Hardison,
- and Webb Miller
Genome Res. April 1, 2000 10: 577-586; doi:10.1101/gr.10.4.577
....A. , Meisler M.H. ( 1999 ) Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res. 9 : 53 – 61 . ↵ Koop B.F. ( 1995 ) Human and rodent sequence comparisons: A mosaic model of genomic evolution. Trends Genet. 11 : 367 – 371 . ↵ Koop B.F. , Hood L. ( 1994...
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LETTER: Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
- Serafim Batzoglou,
- Lior Pachter,
- Jill P. Mesirov,
- Bonnie Berger,
- and Eric S. Lander
Genome Res. July 1, 2000 10: 950-958; doi:10.1101/gr.10.7.950
...elements: A reason to sequence the mouse . Genome Res. 7 : 959 – 966 . ↵ Jang W. , Hua A. , Spilson S. V. , Miller W. , Roe B. A. , Meisler M. H. ( 1999 ) Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13. Genome Res.. 9 : 53 – 61 . ↵ Koop B. F. , Hood L. ( 1994...

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