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Research: Candida albicans isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres
- Ursula Oggenfuss,
- Robert T. Todd,
- Natthapon Soisangwan,
- Bailey Kemp,
- Alison Guyer,
- Annette Beach,
- and Anna Selmecki
Genome Res. April 2025 35: 824-838; Published in Advance October 22, 2024, doi:10.1101/gr.279301.124
...mechanisms, including TE mobilization or homologous repair following DNA-double-stranded breaks (Todd et al. 2019, Berdan et al. 2021).The human fungal pathogen Candida albicans is an asexual diploid organism that displays significant genomic plasticity (Vande Zande et al. 2023). SVs are important drivers...
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Research: Polymorphic centromere locations in the pathogenic yeast Candida parapsilosis
- Mihaela Ola,
- Caoimhe E. O'Brien,
- Aisling Y. Coughlan,
- Qinxi Ma,
- Paul D. Donovan,
- Kenneth H. Wolfe,
- and Geraldine Butler
Genome Res. May 2020 30: 684-696; Published in Advance May 18, 2020, doi:10.1101/gr.257816.119
...leucine (Ohama et al. 1993). The centromeres of C. albicans and Candida dubliniensis are described as “small regional”; they are characterized by gene-free regions of 4–18 kb, with 3–5 kb occupied by Cse4 (Sanyal et al. 2004; Padmanabhan et al. 2008; Roy and Sanyal 2011). The flanking compact chromatin...
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Resource: Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
- Vincent M. Bruno,
- Zhong Wang,
- Sadie L. Marjani,
- Ghia M. Euskirchen,
- Jeffrey Martin,
- Gavin Sherlock,
- and Michael Snyder
Genome Res. October 2010 20: 1451-1458; Published in Advance September 1, 2010, doi:10.1101/gr.109553.110
...Michael Snyder Michael Bruno, Vincent M Bruno Vincent M. Euskirchen, GM Wang Snyder Sherlock Vincent M, Bruno Snyder, M GM Euskirchen genome;gr.109553.110 10.1101/gr.109553.110 1088-9051 Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq Resource...
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Research: Efficient neocentromere formation is suppressed by gene conversion to maintain centromere function at native physical chromosomal loci in Candida albicans
- Jitendra Thakur and
- Kaustuv Sanyal
Genome Res. April 2013 23: 638-652; Published in Advance February 25, 2013, doi:10.1101/gr.141614.112
...have been identified in several organisms (Lachner et al. 2001; Nakayama et al. 2001; Wong et al. 2006; Folco et al. 2008; Gopalakrishnan et al. 2009; Roy and Sanyal 2011). Two closely related human pathogenic budding yeasts, Candida albicans and Candida dubliniensis, carry 3- to 5-kb-long unique...
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ARTICLE: Multiple LTR-Retrotransposon Families in the Asexual Yeast Candida albicans
- Timothy J.D. Goodwin and
- Russell T.M. Poulter
Genome Res. February 1, 2000 10: 174-191; doi:10.1101/gr.10.2.174
...of the long terminal repeat (LTR) retrotransposons in the asexual yeast Candida albicans . A database of assembled C. albicans genomic sequence at Stanford University, which represents 14.9 Mb of the 16-Mb haploid genome, was screened and &gt;350 distinct retrotransposon insertions were identified...
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PERSPECTIVE: Genomics of the fungal kingdom: Insights into eukaryotic biology
- James E. Galagan,
- Matthew R. Henn,
- Li-Jun Ma,
- Christina A. Cuomo,
- and Bruce Birren
Genome Res. December 2005 15: 1620-1631; doi:10.1101/gr.3767105
...health ( Beck-Sague and Jarvis 1993 ; Swartz 1994 ). They have lethal consequences for the growing population of patients immunocompromised with AIDS and leukemias or therapeutically immunosuppressed. The two most common fungal pathogens are Candida and Aspergillus species: Candidiasis is the most common...
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LETTER: Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans
- Quinn M. Mitrovich,
- Brian B. Tuch,
- Christine Guthrie,
- and Alexander D. Johnson
Genome Res. April 2007 17: 492-502; Published in Advance March 9, 2007, doi:10.1101/gr.6111907
...and Biophysics, University of California, San Francisco, San Francisco, California 94143-2200, USA Abstract Candida albicans is the most common fungal pathogen of humans. Frequently found as a commensal within the digestive tracts of healthy individuals, C. albicans is an opportunistic pathogen...
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Article: Comparative genomics of protoploid Saccharomycetaceae
- The Génolevures Consortium,
- Jean-Luc Souciet,
- Bernard Dujon,
- Claude Gaillardin,
- Mark Johnston,
- Philippe V. Baret,
- Paul Cliften,
- David J. Sherman,
- Jean Weissenbach,
- Eric Westhof,
- Patrick Wincker,
- Claire Jubin,
- Julie Poulain,
- Valérie Barbe,
- Béatrice Ségurens,
- François Artiguenave,
- Véronique Anthouard,
- Benoit Vacherie,
- Marie-Eve Val,
- Robert S. Fulton,
- Patrick Minx,
- Richard Wilson,
- Pascal Durrens,
- Géraldine Jean,
- Christian Marck,
- Tiphaine Martin,
- Macha Nikolski,
- Thomas Rolland,
- Marie-Line Seret,
- Serge Casarégola,
- Laurence Despons,
- Cécile Fairhead,
- Gilles Fischer,
- Ingrid Lafontaine,
- Véronique Leh,
- Marc Lemaire,
- Jacky de Montigny,
- Cécile Neuvéglise,
- Agnès Thierry,
- Isabelle Blanc-Lenfle,
- Claudine Bleykasten,
- Julie Diffels,
- Emilie Fritsch,
- Lionel Frangeul,
- Adrien Goëffon,
- Nicolas Jauniaux,
- Rym Kachouri-Lafond,
- Célia Payen,
- Serge Potier,
- Lenka Pribylova,
- Christophe Ozanne,
- Guy-Franck Richard,
- Christine Sacerdot,
- Marie-Laure Straub,
- and Emmanuel Talla
Genome Res. October 2009 19: 1696-1709; Published in Advance June 12, 2009, doi:10.1101/gr.091546.109
...subdivision of hemiascomycetes consists of species that translate CTG codons as serine rather than leucine, a reassignment believed to have occurred more than 170 million years ago (Miranda et al. 2006). This subdivision has been intensely studied because it contains the pathogenic yeastCandida albicans...
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ARTICLE: Sixty Alleles of the ALS7 Open Reading Frame in Candida albicans: ALS7 Is a Hypermutable Contingency Locus
- Ningxin Zhang,
- Annette L. Harrex,
- Barbara R. Holland,
- Lauren E. Fenton,
- Richard D. Cannon,
- and Jan Schmid
Genome Res. September 2003 13: 2005-2017; doi:10.1101/gr.1024903
...of Otago, Dunedin, New Zealand Abstract The ALS (agglutinin-like sequence) gene family encodes proteins that play a role in adherence of the yeast Candida albicans to endothelial and epithelial cells. The proteins are proposed as virulence factors for this important fungal pathogen...
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Perspective: The genetics and epigenetics of satellite centromeres
- Paul B. Talbert and
- Steven Henikoff
Genome Res. April 2022 32: 608-615; Published in Advance March 31, 2022, doi:10.1101/gr.275351.121
...human X chromosome. Nature 585: 79–84. doi:10.1038/s41586-020-2547-7 ↵Mitra S, Gómez-Raja J, Larriba G, Dubey DD, Sanyal K. 2014. Rad51–Rad52 mediated maintenance of centromeric chromatin in Candida albicans. PLoS Genet 10: e1004344. doi...
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