Searching journal content for articles similar to Jackman et al. 27 (5): 768.

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  1. Method: RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
    • Ka Ming Nip,
    • Readman Chiu,
    • Chen Yang,
    • Justin Chu,
    • Hamid Mohamadi,
    • René L. Warren,
    • and Inanc Birol
    Genome Res. August 2020 30: 1191-1200; Published in Advance August 17, 2020, doi:10.1101/gr.260174.119
    .... 2017. ABySS 2.0: resource-efficient assembly of large s using a Bloom filter. Genome Res 27: 768–777. doi:10.1101/gr.214346.116 ↵Jay TR, von Saucken VE, Landreth GE. 2017. TREM2 in neurodegenerative diseases. Mol Neurodegener 12: 56. doi:10.1186/s13024-017-0197-5 ↵Kim D, Paggi JM, Park C, Bennett C...
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  2. RECOMB 2022 Special/Methods: Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs
    • Amatur Rahman and
    • Paul Medvedev
    Genome Res. September 2022 32: 1746-1753; Published in Advance July 27, 2022, doi:10.1101/gr.276601.122
    ...BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, et al. 2017. ABySS 2.0: resource-efficient assembly of large s using a Bloom filter. Genome Res 27: 768–777. doi:10.1101/gr.214346.116 ↵Li D, Liu C-M, Luo R, Sadakane K, Lam T-W. 2015. MEGAHIT: an ultra-fast single...
  3. Resource: The western redcedar genome reveals low genetic diversity in a self-compatible conifer
    • Tal J. Shalev,
    • Omnia Gamal El-Dien,
    • Macaire M.S. Yuen,
    • Shu Shengqiang,
    • Shaun D. Jackman,
    • René L. Warren,
    • Lauren Coombe,
    • Lise van der Merwe,
    • Ada Stewart,
    • Lori B. Boston,
    • Christopher Plott,
    • Jerry Jenkins,
    • Guifen He,
    • Juying Yan,
    • Mi Yan,
    • Jie Guo,
    • Jesse W. Breinholt,
    • Leandro G. Neves,
    • Jane Grimwood,
    • Loren H. Rieseberg,
    • Jeremy Schmutz,
    • Inanc Birol,
    • Matias Kirst,
    • Alvin D. Yanchuk,
    • Carol Ritland,
    • John H. Russell,
    • and Joerg Bohlmann
    Genome Res. October 2022 32: 1952-1964; Published in Advance September 15, 2022, doi:10.1101/gr.276358.121
    ...-end reads were assembled using ABySS v2.1.4 (parameters: k = 128; kc = 3) and scaffolded using the mate-pair reads with ABySS-Scaffold (Supplemental Fig. S9; Jackman et al. 2017). Linked-reads were aligned, and misassemblies were identified and corrected with Tigmint v1.1.2 (Jackman et al. 2018...
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  4. Editorial: New advances in sequence assembly
    • Adam M. Phillippy
    Genome Res. May 2017 27: xi-xiii; doi:10.1101/gr.223057.117
    ...issue). doi: 10.1101/gr.214007.116. Jackman SD, Vandervalk BP, Mohamadi H, Chu J, Yeo S, Hammond SA, Jahesh G, Khan H, Coombe L, Warren RL, et al. 2017. ABySS 2.0: resource-efficient assembly of large s using a Bloom filter. Genome Res (this issue). doi: 10.1101/gr.214346.116. JiaoWB,Garcia Accinelli G...
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