Searching journal content for articles similar to Idury and Cardon 7 (11): 1104.

Displaying results 1-10 of 37

For checked items

view abstracts
download to citation manager

Select this article
LETTER: Linkage Disequilibrium Between Microsatellite Markers Extends Beyond 1 cM on Chromosome 20 in Finns
- Karen L. Mohlke,
- Ethan M. Lange,
- Timo T. Valle,
- Soumitra Ghosh,
- Victoria L. Magnuson,
- Kaisa Silander,
- Richard M. Watanabe,
- Peter S. Chines,
- Richard N. Bergman,
- Jaakko Tuomilehto,
- Francis S. Collins,
- and Michael Boehnke
Genome Res. July 1, 2001 11: 1221-1226; doi:10.1101/gr.173201
..., automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. Genome Res. 7 : 165 – 178 . ↵ Ghosh S. , Watanabe R.M. , Hauser E.R. , Valle T. , Magnuson V.L. , Erdos M.R. , Langefeld C.D. , Balow J. , Jr. , Ally D.S. , Kohtamaki K...
Select this article
RESOURCE: Toward High-Throughput Genotyping: Dynamic and Automatic Software for Manipulating Large-Scale Genotype Data Using Fluorescently Labeled Dinucleotide Markers
- Jin-Long Li,
- Hongyi Deng,
- Dong-Bing Lai,
- Fuhua Xu,
- Jian Chen,
- Guimin Gao,
- Robert R. Recker,
- and Hong-Wen Deng
Genome Res. July 1, 2001 11: 1304-1314; doi:10.1101/gr.159701
...(functions) of GenoDB : loading raw genotype data from automated machines, adjustment of raw data by CEPH control DNA, allele binning, and compilation of genotype data for the Mendelian inheritance check of marker genotypes in pedigrees by PedCheck ( O'Connell and Weeks 1998 ). These four functions can...
Select this article
RESEARCH: A High-Density Integrated Genetic Linkage and Radiation Hybrid Map of the Laboratory Rat
- Robert G. Steen,
- Anne E. Kwitek-Black,
- Christopher Glenn,
- Jo Gullings-Handley,
- William Van Etten,
- O. Scott Atkinson,
- Diane Appel,
- Simon Twigger,
- Melanie Muir,
- Tim Mull,
- Mary Granados,
- Mushira Kissebah,
- Kerri Russo,
- Robbin Crane,
- Michael Popp,
- Marc Peden,
- Tara Matise,
- Donna M. Brown,
- Jian Lu,
- Stephen Kingsmore,
- Peter J. Tonellato,
- Steve Rozen,
- Donna Slonim,
- Peter Young,
- Margit Knoblauch,
- Abraham Provoost,
- Detlev Ganten,
- Steven D. Colman,
- Jonathan Rothberg,
- Eric S. Lander,
- and Howard J. Jacob
Genome Res. June 1, 1999 9: AP1-AP8; Published in Advance May 21, 1999, doi:10.1101/gr.9.6.AP1
...linkage map of the rat and the first radiation hybrid (RH) map of the rat. The genetic map was constructed in two F2 intercrosses (SHRSP × BN and FHH × ACI), containing a total of 4736 simple sequence length polymorphism (SSLP) markers. Allele sizes for 4328 of the genetic markers were characterized in 48...
Select this article
METHODS: Evaluation of Single Nucleotide Polymorphism Typing with Invader on PCR Amplicons and Its Automation
- Charles A. Mein,
- Bryan J. Barratt,
- Michael G. Dunn,
- Thorsten Siegmund,
- Annabel N. Smith,
- Laura Esposito,
- Sarah Nutland,
- Helen E. Stevens,
- Amanda J. Wilson,
- Michael S. Phillips,
- Nancy Jarvis,
- Scott Law,
- Monika de Arruda,
- and John A. Todd
Genome Res. March 1, 2000 10: 330-343; doi:10.1101/gr.10.3.330
...microtitre plate format and an automated end-point capture of fluorescent signal. Simple semiautomated data interpretation allows the generation of ∼25,000 genotypes per person per week, which is 10-fold greater than gel-based SNP typing and microsatellite typing in our laboratory. Savings on labor costs...
Select this article
ARTICLE: Generation of a high-resolution genetic map and a YAC contig of the Lurcher locus on mouse chromosome 6.
- J Zuo,
- P L De Jager,
- D J Norman,
- and N Heintz
Genome Res. November 1995 5: 381-392; doi:10.1101/gr.5.4.381
...al. 1991). In addition, 580 animals of a generic backcross between Mus spretus and C57BL/6 (The European Collaborative Interspecific Backcross) were utilized for the fine genetic mapping of the Lc locus. Using three RFLP markers and nine microsatellite markers in the vicinity of the Lc locus, we...
Select this article
Method: High-fidelity, large-scale targeted profiling of microsatellites
- Caitlin A. Loh,
- Danielle A. Shields,
- Adam Schwing,
- and Gilad D. Evrony
Genome Res. July 2024 34: 1008-1026; Published in Advance July 16, 2024, doi:10.1101/gr.278785.123
...of three linear and two exponential PCR cycles, and the posthybridization protocol consisted of three linear and five exponential PCR cycles. (C) Fraction of genotyped loci on male Chromosome X microsatellite loci in three replicates of sample NA12877 (male) in different bins of variant allele fraction...
Select this article
Method: Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding
- Dmitry Antipov,
- Mikko Rautiainen,
- Sergey Nurk,
- Brian P. Walenz,
- Steven J. Solar,
- Adam M. Phillippy,
- and Sergey Koren
Genome Res. July 2025 35: 1583-1594; Published in Advance May 19, 2025, doi:10.1101/gr.280383.124
...the most complex repeats, this project relied on the semimanual combination of long, accurate Pacific Biosciences (PacBio) HiFi and ultralong Oxford Nanopore Technologies sequencing reads. The Verkko assembler later automated this process, achieving complete assemblies for approximately half...
OPEN ACCESS ARTICLE
Select this article
Review: Artificial intelligence and machine learning in cell-free-DNA-based diagnostics
- W.H. Adrian Tsui,
- Spencer C. Ding,
- Peiyong Jiang,
- and Y.M. Dennis Lo
Genome Res. January 2025 35: 1-19; doi:10.1101/gr.278413.123
...coverage signals across nonoverlapping 50 kb bins -wide (Fig. 1). The normalized read counts across bins were fitted into both a high-dimensional elastic net and a reduced-rank regression model with respect to fetal DNA fractions. Simple linear regression is the most straightforward approach to make...
OPEN ACCESS ARTICLE
Select this article
Method: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
- Sergey Koren,
- Zhigui Bao,
- Andrea Guarracino,
- Shujun Ou,
- Sara Goodwin,
- Katharine M. Jenike,
- Julian Lucas,
- Brandy McNulty,
- Jimin Park,
- Mikko Rautiainen,
- Arang Rhie,
- Dick Roelofs,
- Harrie Schneiders,
- Ilse Vrijenhoek,
- Koen Nijbroek,
- Olle Nordesjo,
- Sergey Nurk,
- Mike Vella,
- Katherine R. Lawrence,
- Doreen Ware,
- Michael C. Schatz,
- Erik Garrison,
- Sanwen Huang,
- William Richard McCombie,
- Karen H. Miga,
- Alexander H.J. Wittenberg,
- and Adam M. Phillippy
Genome Res. November 2024 34: 1919-1930; Published in Advance November 6, 2024, doi:10.1101/gr.279334.124
...(https://github.com/marbl/HG002/blob/main/README.md) and the trio assembly was able to resolve it with a single scaffold. No previous automated HiFi + ONT assembly was able to resolve this chromosome, despite the short rDNA array and higher coverage (Jarvis et al. 2022; Rautiainen et al. 2023; Cheng et...
Select this article
Method: HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
- Sergey Nurk,
- Brian P. Walenz,
- Arang Rhie,
- Mitchell R. Vollger,
- Glennis A. Logsdon,
- Robert Grothe,
- Karen H. Miga,
- Evan E. Eichler,
- Adam M. Phillippy,
- and Sergey Koren
Genome Res. September 2020 30: 1291-1305; Published in Advance August 14, 2020, doi:10.1101/gr.263566.120
...Fi data further enabled draft assemblies of nine centromeric regions, which are one of the final challenges of automated telomere-to-telomere assembly. Assembly of other centromeric regions is likely limited by a low frequency of unique markers compared with current HiFi read lengths. In contrast...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Idury and Cardon 7 (11): 1104.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: