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Method: netNMF-sc: leveraging gene–gene interactions for imputation and dimensionality reduction in single-cell expression analysis
- Rebecca Elyanow,
- Bianca Dumitrascu,
- Barbara E. Engelhardt,
- and Benjamin J. Raphael
Genome Res. February 2020 30: 195-204; Published in Advance January 28, 2020, doi:10.1101/gr.251603.119
....1038/s41592-018-0033-z ↵Iacono G, Mereu E, Guillaumet-Adkins A, Corominas R, Cuscó I, Rodríguez-Esteban G, Gut M, Pérez-Jurado LA, Gut I, Heyn H. 2018. bigSCale: an analytical framework for big-scale single-cell data. Genome Res 28: 878–890. doi:10.1101/gr.230771.117 ↵Kingma DP, Ba J. 2014. Adam...
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Method: SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection
- Shibiao Wan,
- Junil Kim,
- and Kyoung Jae Won
Genome Res. February 2020 30: 205-213; Published in Advance January 28, 2020, doi:10.1101/gr.254557.119
...A, Oja E. 2000. Independent component analysis: algorithms and applications. Neural Netw 13: 411–430. doi:10.1016/S0893-6080(00)00026-5 ↵Iacono G, Mereu E, Guillaumet-Adkins A, Corominas R, Cuscó I, Rodríguez-Esteban G, Gut M, Pérez-Jurado LA, Gut I, Heyn H. 2018. bigSCale: an analytical framework...

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