Searching journal content for articles similar to Hunt et al. 29 (8): 1262.

Displaying results 1-10 of 6194

For checked items

view abstracts
download to citation manager

Select this article
Research: Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock
- Akanksha Bafna,
- Gareth Banks,
- Michael H. Hastings,
- and Patrick M. Nolan
Genome Res. May 2023 33: 673-688; Published in Advance May 8, 2023, doi:10.1101/gr.277581.122
...in the SCN central clock that potentially contributes to maintaining its uniquely stable circadian timekeeping.ResultsGenome-wide promoter and enhancer site mapping in the SCN using histone ChIP-seqTo identify DNA regulatory elements influencing gene transcription in the SCN, we focused on SCN...
OPEN ACCESS ARTICLE
Select this article
Research: Epigenetic characterization of pseudogenes across human tissues
- Yunzhe Jiang,
- Beatrice Borsari,
- and Mark Gerstein
Genome Res. April 15, 2026 gr.280768.125; Published in Advance April 15, 2026, doi:10.1101/gr.280768.125
...this catalog, we show that, across multiple tissues, transcribed, unprocessed pseudogenes exhibit chromatin patterns similar to those of active protein-coding genes. In contrast, transcribed, processed pseudogenes show a strikingly different pattern: most lack the canonical hallmarks of transcription (e...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Method: Joint imputation and deconvolution of gene expression across spatial transcriptomics platforms
- Hongyu Zheng,
- Hirak Sarkar,
- and Benjamin J. Raphael
Genome Res. December 2025 35: 2734-2743; Published in Advance November 17, 2025, doi:10.1101/gr.280555.125
.... Order determined by a coin flip. Corresponding author: braphael@princeton.eduAbstractSpatially resolved transcriptomics (SRT) technologies measure gene expression across thousands of spatial locations within a tissue slice. Multiple SRT technologies are currently available and others are in active...
OPEN ACCESS ARTICLE
Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
..., presumably via accelerated recombination during fbxn gene duplication, thereby reinforcing genetic divergence among populations and between species.An unusually conserved genomic region is identified surrounding Cni-neib-1Given the highly dynamic nature of fbxn genes across C. nigoni populations...
Select this article
Perspective: Functional assays in Drosophila facilitate classification of variants of uncertain significance associated with rare diseases
- Jung-Wan Mok,
- Shelley B. Gibson,
- Haley A. Dostalik,
- and Shinya Yamamoto
Genome Res. July 2025 35: 1473-1484; Published in Advance June 4, 2025, doi:10.1101/gr.278291.123
...and functional classification of VUS. To compile a list of papers published using Drosophila melanogaster as a model organism to study rare disease genes and variants between January 2020 and April 2024, we first performed manual inspections of all abstracts published in the following journals where many new...
Select this article
Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
- Jacopo Martelossi,
- Jacopo Vujovic,
- Yue Huang,
- Alessia Tatti,
- Kaiwei Xu,
- Federico Puliga,
- Yuanxue Chen,
- Omar Rota Stabelli,
- Fabrizio Ghiselli,
- Xiaoping Zhang,
- and Alessandra Zambonelli
Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
...45S rDNA loci and all 5S rDNA genes to evaluate a possible intragenomic variation. 45S rDNA loci identified from contig 16 to contig 29 are highly homogenized, without any insertions or deletions and only seven positions harboring variants unique or shared across paralog copies (Fig. 2D). Instead...
Select this article
Research: Analyzing super-enhancer temporal dynamics reveals potential critical enhancers and their gene regulatory networks underlying skeletal muscle development
- Song Zhang,
- Chao Wang,
- Shenghua Qin,
- Choulin Chen,
- Yongzhou Bao,
- Yuanyuan Zhang,
- Lingna Xu,
- Qingyou Liu,
- Yunxiang Zhao,
- Kui Li,
- Zhonglin Tang,
- and Yuwen Liu
Genome Res. December 2024 34: 2190-2202; Published in Advance October 21, 2024, doi:10.1101/gr.278344.123
...across 27 developmental stages (Supplemental Fig. S5D,E; Yang et al. 2019), we inferred the upstream TFs and downstream target genes of the enhancers corresponding to these SE eRNAs. We then prioritized the network by retaining only SE eRNAs with GWAS variants associated with pig meat and carcass traits...
Select this article
Research: A genome-wide survey reveals a diverse array of enhancers coordinates the Drosophila innate immune response
- Lianne B Cohen,
- Tamara Hadzic,
- Caitlin Sauer,
- Julia R Gibbs,
- and Zeba Wunderlich
Genome Res. April 15, 2026 gr.281432.125; Published in Advance April 15, 2026, doi:10.1101/gr.281432.125
...that modulate gene expression by binding transcription 16 factors (TFs). While enhancers and transcription factor binding sites (TFBS) have been 17 identified for several immune responsive genes in Drosophila, most enhancers that regulate 18 immune-induced genes are unknown. By identifying enhancers, we can...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Research: Natural diversity of telomere length distributions across 100 Saccharomyces cerevisiae strains
- Clotilde Garrido,
- Cintia Gómez-Muñoz,
- Etienne Kornobis,
- Nicolas Agier,
- Oana Ilioaia,
- Gilles Fischer,
- and Zhou Xu
Genome Res. March 2026 36: 522-533; Published in Advance January 16, 2026, doi:10.1101/gr.281132.125
...al. 2023) and derive biologically relevant insights.We observed a large diversity of TL distributions across a representative panel of strains. Compared with the commonly studied laboratory strains, some strains present much shorter or longer mean TLs, which might be explained by genetic variants...
Select this article
Research: Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells
- Jennifer A. Urban,
- Daniel Ringwalt,
- John M. Urban,
- Wingel Xue,
- Ryan Gleason,
- Keji Zhao,
- and Xin Chen
Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
...enrichment despite lacking well-positioned nucleosomes (Fig. 3E). This noncanonical H3K27me3 enrichment resembles the pattern observed in female Drosophila GSCs, in which H3K27me3 is detectable at both inactive and active gene loci (DeLuca et al. 2020).In contrast, in CySC-like cells, H3K27me3 is most...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hunt et al. 29 (8): 1262.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: