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Research: Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock
- Akanksha Bafna,
- Gareth Banks,
- Michael H. Hastings,
- and Patrick M. Nolan
Genome Res. May 2023 33: 673-688; Published in Advance May 8, 2023, doi:10.1101/gr.277581.122
....1.1.20160309 (Feng et al. 2012) with the options ‐‐qvalue 0.05 ‐‐gsize mm:1.87e9 ‐‐format BAMPE. The plotPCA function of deepTools2 suite (Ramírez et al. 2016) was used with the default (top 1000 most variable rows) settings to conduct an initial quality analysis through PCA on the enrichment for H3K4me3 and H3K27ac...
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Research: Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs
- Jake Yeung,
- Jérôme Mermet,
- Céline Jouffe,
- Julien Marquis,
- Aline Charpagne,
- Frédéric Gachon,
- and Felix Naef
Genome Res. February 2018 28: 182-191; Published in Advance December 18, 2017, doi:10.1101/gr.222430.117
..., Schaad O, Kornmann B, Lo Sasso G, Moschetta A, Schibler U. 2009. REV-ERBα participates in circadian SREBP signaling and bile acid homeostasis. PLoS Biol 7: e1000181. ↵Lee JW, Chou CL, Knepper MA. 2015. Deep sequencing in microdissected renal tubules identifies nephron segment-specific transcriptomes. J...
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