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  1. Resource: Long-read RNA sequencing reveals widespread sex-specific alternative splicing in threespine stickleback fish
    • Alice S. Naftaly,
    • Shana Pau,
    • and Michael A. White
    Genome Res. August 2021 31: 1486-1497; Published in Advance June 15, 2021, doi:10.1101/gr.274282.120
    ...al. 2019). Long-read RNA sequencing has refined existing gene annotations as well as characterized pervasive alternative splicing among organs (Abdel-Ghany et al. 2016; Wang et al. 2016a; Kuo et al. 2017; Li et al. 2018; Zhang et al. 2019).Although transcriptome complexity has been increasingly...
  2. Research: Large palindromes on the primate X Chromosome are preserved by natural selection
    • Emily K. Jackson,
    • Daniel W. Bellott,
    • Ting-Jan Cho,
    • Helen Skaletsky,
    • Jennifer F. Hughes,
    • Tatyana Pyntikova,
    • and David C. Page
    Genome Res. August 2021 31: 1337-1352; Published in Advance July 21, 2021, doi:10.1101/gr.275188.120
    ..., with seven of 12 conserved palindromes showing no spacer orthology between human and rhesus macaque. Analysis of the 1000 Genomes Project data set revealed that human X-palindrome spacers are enriched for deletions relative to arms and flanking sequence, including a common spacer deletion that affects 13...
  3. LETTER: Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
    • Romain A. Studer,
    • Simon Penel,
    • Laurent Duret,
    • and Marc Robinson-Rechavi
    Genome Res. September 2008 18: 1393-1402; Published in Advance June 18, 2008, doi:10.1101/gr.076992.108
    ....); the chicken Gallus gallus ( International Chicken Genome Sequencing Consortium 2004 ); the seven mammals Monodelphis domestica ( Mikkelsen et al. 2007 ), Bos taurus (HGSC at Baylor College of Medicine, unpubl.), Canis familiaris ( Lindblad-Toh et al. 2005 ), Mus musculus ( Waterston et al. 2002 ), Rattus...
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