Searching journal content for articles similar to Hubbard et al. 15 (1): 174.

Displaying results 1-10 of 13

For checked items

view abstracts
download to citation manager

Select this article
PERSPECTIVE: Chicken genome: Current status and future opportunities
- David W. Burt
Genome Res. December 2005 15: 1692-1698; doi:10.1101/gr.4141805
...,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Res. 15 : 174 -183. ↵ Hughes, A.L. and Piontkivska, H. 2005 . DNA repeat arrays in chicken and human s and the adaptive evolution of avian size. BMC Evol. Biol. 5 : 12 . ↵ Kaiser, P., Rothwell, L., Avery, S., and Balu, S. 2004 . Evolution...
Select this article
LETTER: Fast-X on the Z: Rapid evolution of sex-linked genes in birds
- Judith E. Mank,
- Erik Axelsson,
- and Hans Ellegren
Genome Res. May 2007 17: 618-624; Published in Advance April 6, 2007, doi:10.1101/gr.6031907
....J. , Overton, I.M. , McLaren, S.R. , Croning, M.D.R. , Boardman, P.E. , Bonfield, J.K. , Burnside, J. , Davies, R.M. , et al. ( 2005 ) Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags . Genome Res. 15 : 174 – 183 . ↵ International Chicken Genome...
Select this article
LETTER: Organization and Evolution of a Gene-Rich Region of the Mouse Genome: A 12.7-Mb Region Deleted in the Del(13)Svea36H Mouse
- Ann-Marie Mallon,
- Laurens Wilming,
- Joseph Weekes,
- James G.R. Gilbert,
- Jennifer Ashurst,
- Sandrine Peyrefitte,
- Lucy Matthews,
- Matthew Cadman,
- Richard McKeone,
- Chris A. Sellick,
- Ruth Arkell,
- Marc R.M. Botcherby,
- Mark A. Strivens,
- R. Duncan Campbell,
- Simon Gregory,
- Paul Denny,
- John M. Hancock,
- Jane Rogers,
- and Steve D.M. Brown
Genome Res. October 2004 14: 1888-1901; Published in Advance September 13, 2004, doi:10.1101/gr.2478604
...able to map one copy and speculated the remaining copies (which they inferred on the basis of cDNA and EST data) to lie in a gap between two clones, RP23-231P12 and RP23-20A22. This gap is closed in our sequence, and no such copies are found. None of the cDNAs or ESTs they attribute to these genes...
Select this article
Methods: Targeted discovery of novel human exons by comparative genomics
- Adam Siepel,
- Mark Diekhans,
- Broňa Brejová,
- Laura Langton,
- Michael Stevens,
- Charles L.G. Comstock,
- Colleen Davis,
- Brent Ewing,
- Shelly Oommen,
- Christopher Lau,
- Hung-Chun Yu,
- Jianfeng Li,
- Bruce A. Roe,
- Phil Green,
- Daniela S. Gerhard,
- Gary Temple,
- David Haussler,
- and Michael R. Brent
Genome Res. December 2007 17: 1763-1773; Published in Advance November 7, 2007, doi:10.1101/gr.7128207
...for measuring evidence of transcription at the level of individual exons. Based on alignments to the sequence of the RSTs and all other public (human) cDNAs, we defined a set of benchmark exons (BMEs), representing our current best estimate of the true genomic boundaries of all cDNA-supported exons...
Select this article
LETTER: Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity
- Miao Sun,
- Laurence D. Hurst,
- Gordon G. Carmichael,
- and Jianjun Chen
Genome Res. July 2006 16: 922-933; Published in Advance June 12, 2006, doi:10.1101/gr.5210006
...a much greater number of SA pairs than any other mammal. It is reasonable to suggest that with extensive large-scale cDNA sequencing effort, a similar high abundance of SA transcripts would be detected in nonhuman s. Indeed, based on 104,876 FANTOM2 mouse cDNA and public mRNA sequences ( Okazaki et al...
Select this article
LETTER: Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- Kouichi Kimura,
- Ai Wakamatsu,
- Yutaka Suzuki,
- Toshio Ota,
- Tetsuo Nishikawa,
- Riu Yamashita,
- Jun-ichi Yamamoto,
- Mitsuo Sekine,
- Katsuki Tsuritani,
- Hiroyuki Wakaguri,
- Shizuko Ishii,
- Tomoyasu Sugiyama,
- Kaoru Saito,
- Yuko Isono,
- Ryotaro Irie,
- Norihiro Kushida,
- Takahiro Yoneyama,
- Rie Otsuka,
- Katsuhiro Kanda,
- Takahide Yokoi,
- Hiroshi Kondo,
- Masako Wagatsuma,
- Katsuji Murakawa,
- Shinichi Ishida,
- Tadashi Ishibashi,
- Asako Takahashi-Fujii,
- Tomoo Tanase,
- Keiichi Nagai,
- Hisashi Kikuchi,
- Kenta Nakai,
- Takao Isogai,
- and Sumio Sugano
Genome Res. January 2006 16: 55-65; Published in Advance December 12, 2005, doi:10.1101/gr.4039406
...sequences that were successfully mapped from their first base was 1,536,604. Using the positional information of the exactly and uniquely mapped 5′-ends of the oligo-cap cDNAs, we defined the TSSs as the independent genomic positions to which the first bases of the oligo-cap cDNAs were mapped ( Fig. 1...
Select this article
PERSPECTIVE: Genome annotation past, present, and future: How to define an ORF at each locus
- Michael R. Brent
Genome Res. December 2005 15: 1777-1786; doi:10.1101/gr.3866105
...for Biotechnology Information (NCBI) pipeline were not developed until shortly before the publication of the draft human sequence (1999 or 2000). Trajectory of improving accuracy Aligning cDNA sequences The accuracy of prediction systems based on aligning cDNA or protein sequence depends on the sequences...
Select this article
Letter: Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28
- Margaret L. Delbridge,
- Hardip R. Patel,
- Paul D. Waters,
- Daniel A. McMillan,
- and Jennifer A. Marshall Graves
Genome Res. August 2009 19: 1350-1360; Published in Advance May 13, 2009, doi:10.1101/gr.088625.108
...(including alternatively spliced transcripts) were downloaded from Ensembl v50. Human cDNA sequences of stratum 2 genes were used as query sequences for reciprocal best hit BLAST search (Altschul and Lipman 1990) against the chicken/zebra finch EST/ cDNA database. Default nucleotide BLAST search parameters...
OPEN ACCESS ARTICLE
Select this article
LETTER: The Human Ribosomal Protein Genes: Sequencing and Comparative Analysis of 73 Genes
- Maki Yoshihama,
- Tamayo Uechi,
- Shuichi Asakawa,
- Kazuhiko Kawasaki,
- Seishi Kato,
- Sayomi Higa,
- Noriko Maeda,
- Shinsei Minoshima,
- Tatsuo Tanaka,
- Nobuyoshi Shimizu,
- and Naoya Kenmochi
Genome Res. March 1, 2002 12: 379-390; doi:10.1101/gr.214202
...ribosomal proteins (RPs) and compare this class of genes among several eukaryotes. Using genomic and full-length cDNA sequences, we characterized 73 RP genes and found that (1) transcription starts at a C residue within a characteristic oligopyrimidine tract; (2) the promoter region is GC rich, but often...
Select this article
ARTICLE: Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
- Jasmina Ponjavic,
- Chris P. Ponting,
- and Gerton Lunter
Genome Res. May 2007 17: 556-565; Published in Advance March 26, 2007, doi:10.1101/gr.6036807
...supported by ESTs, CAGE tags, or other cDNAs, and thus, as full-length cDNAs, are not partial sequences of, for example, longer protein-coding transcripts. These sets do not contain members of known functional and structural classes of ncRNAs, such as microRNAs and small nucleolar RNAs. To exclude...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hubbard et al. 15 (1): 174.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: