Searching journal content for articles similar to Huang et al. 30 (12): 1789.

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  1. Method: A scalable adaptive quadratic kernel method for interpretable epistasis analysis in complex traits
    • Boyang Fu,
    • Prateek Anand,
    • Aakarsh Anand,
    • Joel Mefford,
    • and Sriram Sankararaman
    Genome Res. September 2024 34: 1294-1303; Published in Advance August 29, 2024, doi:10.1101/gr.279140.124
    ...interaction data. PLoS Comput Biol 7: e1002048. doi:10.1371/journal.pcbi.1002048 ↵Prabhu S, Pe'er I. 2012. Ultrafast -wide scan for SNP–SNP interactions in common complex disease. Genome Res 22: 2230–2240. doi:10.1101/gr.137885.112 ↵Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D. 2006...
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  2. Resource: GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes
    • Yi Shao,
    • Chunyan Chen,
    • Hao Shen,
    • Bin Z. He,
    • Daqi Yu,
    • Shuai Jiang,
    • Shilei Zhao,
    • Zhiqiang Gao,
    • Zhenglin Zhu,
    • Xi Chen,
    • Yan Fu,
    • Hua Chen,
    • Ge Gao,
    • Manyuan Long,
    • and Yong E. Zhang
    Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
    ...challenges in the study of new genes are the inference of gene ages and annotation of their protein-coding potential. To tackle these challenges, we created GenTree, an integrated online database that compiles age inferences from three major methods together with functional genomic data for new genes. Genome...
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  3. Resource: A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
    • Michael A. Eberle,
    • Epameinondas Fritzilas,
    • Peter Krusche,
    • Morten Källberg,
    • Benjamin L. Moore,
    • Mitchell A. Bekritsky,
    • Zamin Iqbal,
    • Han-Yu Chuang,
    • Sean J. Humphray,
    • Aaron L. Halpern,
    • Semyon Kruglyak,
    • Elliott H. Margulies,
    • Gil McVean,
    • and David R. Bentley
    Genome Res. January 2017 27: 157-164; Published in Advance November 30, 2016, doi:10.1101/gr.210500.116
    ..., Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao A, et al. 2013. Isaac: ultra-fast whole- secondary analysis on Illumina sequencing platforms. Bioinformatics 29: 2041–2043. 5.4M variants validated by genetic inheritance Genome Research 163 www..org Rimmer A, Phan H, Mathieson I, Iqbal Z, Twigg SR, WGS500...
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  4. Research: Transcription and potential functions of a novel XIST isoform in male peripheral glia
    • Kevin S. O'Leary,
    • Meng-Yen Li,
    • Kevyn Jackson,
    • Lijie Shi,
    • Elena Ezhkova,
    • Bernice E. Morrow,
    • and Deyou Zheng
    Genome Res. February 2026 36: 257-274; Published in Advance December 12, 2025, doi:10.1101/gr.280832.125
    ...that the previously annotated “neural” cells were glia, in agreement with the authors of the Heart Cell Atlas (Kanemaru et al. 2023). Our analysis showed that male glia expressed XIST robustly (Fig. 1A–C). To study if this is specific to the heart, we then obtained human skeletal muscle scRNA-seq data for fibroblasts...
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