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Research: Variation in histone configurations correlates with gene expression across nine inbred strains of mice
- Anna L Tyler,
- Catrina Spruce,
- Romy Kursawe,
- Annat Haber,
- Robyn L Ball,
- Wendy A Pitman,
- Alexander D Fine,
- Narayanan Raghupathy,
- Michael Walker,
- Vivek M Philip,
- Christopher L Baker,
- J. Matthew Mahoney,
- Gary A. Churchill,
- Jennifer J Trowbridge,
- Michael L Stitzel,
- Kenneth Paigen,
- Petko M Petkov,
- and Gregory W Carter
Genome Res. May 22, 2023 gr.277467.122; Published in Advance May 22, 2023, doi:10.1101/gr.277467.122
...into multiple aspects of human health and disease.40 However, although the genetic diversity of these mice is well documented, the epigenetic diversity of41 these strains is relatively unknown.42 Epigenetic modifications, such as histone modifications (Xu et al., 2021; Godini et al., 2018) and43 DNA methylation...
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RESOURCE: A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock
- Martina Johannesson,
- Regina Lopez-Aumatell,
- Pernilla Stridh,
- Margarita Diez,
- Jonatan Tuncel,
- Gloria Blázquez,
- Esther Martinez-Membrives,
- Toni Cañete,
- Elia Vicens-Costa,
- Delyth Graham,
- Richard R. Copley,
- Polinka Hernandez-Pliego,
- Amennai D. Beyeen,
- Johan Öckinger,
- Cristina Fernández-Santamaría,
- Percio S. Gulko,
- Max Brenner,
- Adolf Tobeña,
- Marc Guitart-Masip,
- Lydia Giménez-Llort,
- Anna Dominiczak,
- Rikard Holmdahl,
- Dominique Gauguier,
- Tomas Olsson,
- Richard Mott,
- William Valdar,
- Eva E. Redei,
- Alberto Fernández-Teruel,
- and Jonathan Flint
Genome Res. January 2009 19: 150-158; Published in Advance October 29, 2008, doi:10.1101/gr.081497.108
...A resource for the simultaneous high-resolution mapping of multiple quantitative trait loci in rats: The NIH heterogeneous stock Martina Johannesson 1 , Regina Lopez-Aumatell 2 , Pernilla Stridh 3 , Margarita Diez 3 , Jonatan Tuncel 4...
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Resource: A high-resolution association mapping panel for the dissection of complex traits in mice
- Brian J. Bennett,
- Charles R. Farber,
- Luz Orozco,
- Hyun Min Kang,
- Anatole Ghazalpour,
- Nathan Siemers,
- Michael Neubauer,
- Isaac Neuhaus,
- Roumyana Yordanova,
- Bo Guan,
- Amy Truong,
- Wen-pin Yang,
- Aiqing He,
- Paul Kayne,
- Peter Gargalovic,
- Todd Kirchgessner,
- Calvin Pan,
- Lawrence W. Castellani,
- Emrah Kostem,
- Nicholas Furlotte,
- Thomas A. Drake,
- Eleazar Eskin,
- and Aldons J. Lusis
Genome Res. February 2010 20: 281-290; Published in Advance January 6, 2010, doi:10.1101/gr.099234.109
...in heterogeneous stock mice in multiple tissues. Genome Res 19: 1133–1140. The International HapMap Consortium. 2005. A haplotype map of the human . Nature 437: 1299–1320. High-resolution association mapping panel Genome Research 289 www..org Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E...
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LETTER: A Major Effect QTL Determined by Multiple Genes in Epileptic EL Mice
- Marie E. Legare,
- Frederick S. Bartlett II,
- and Wayne N. Frankel
Genome Res. January 1, 2000 10: 42-48; doi:10.1101/gr.10.1.42
...A Major Effect QTL Determined by Multiple Genes in Epileptic EL Mice Marie E. Legare 1 , Frederick S. Bartlett II 1 , and Wayne N. Frankel 1 , 2 1The Jackson Laboratory, Bar Harbor, Maine 04609 USA Abstract The EL mouse strain provides...
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Research: Collaborative Cross mice and their power to map host susceptibility to Aspergillus fumigatus infection
- Caroline Durrant,
- Hanna Tayem,
- Binnaz Yalcin,
- James Cleak,
- Leo Goodstadt,
- Fernando Pardo-Manuel de Villena,
- Richard Mott,
- and Fuad A. Iraqi
Genome Res. August 2011 21: 1239-1248; Published in Advance April 14, 2011, doi:10.1101/gr.118786.110
...://mus.well.ox.ac.uk/CC/. Reconstruction of CC ancestral mosaics The methodology used to reconstruct the CC s as mosaics of the eight CC founder s is based on the hidden Markov model (HMM) HAPPY (Mott et al. 2000). This was originally developed for heterogeneous stock (HS)mice but was later adapted to work with recombinant inbred lines...
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Perspective: Genetic architecture of quantitative traits in mice, flies, and humans
- Jonathan Flint and
- Trudy F.C. Mackay
Genome Res. May 2009 19: 723-733; doi:10.1101/gr.086660.108
...homologous quantitative trait loci, or quantitative trait genes, have been identified in multiple species, but the availability of high-resolution mapping data will soon make it possible to test the degree of overlap between species. Recent successes in mapping quantitative trait loci (QTLs) that contribute...
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LETTER: Using Advanced Intercross Lines for High-Resolution Mapping of HDL Cholesterol Quantitative Trait Loci
- Xiaosong Wang,
- Isabelle Le Roy,
- Edwige Nicodeme,
- Renhua Li,
- Richard Wagner,
- Christina Petros,
- Gary A. Churchill,
- Stephen Harris,
- Ariel Darvasi,
- Jorge Kirilovsky,
- Pierre L. Roubertoux,
- and Beverly Paigen
Genome Res. July 2003 13: 1654-1664; Published in Advance June 12, 2003, doi:10.1101/gr.1185803
....05) affected HDL levels. The multiple regression model indicated that the Chr 1 QTLs affected HDL levels less in high fat-fed progeny than in chow-fed progeny. View this table: In this window In a new window Table 4. Multiple Regression Model for Loci Affecting Plasma HDL Concentrations in Female Mice From C57...
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METHODS: Multiple Cross and Inbred Strain Haplotype Mapping of Complex-Trait Candidate Genes
- Yeong-Gwon Park,
- Robert Clifford,
- Kenneth H. Buetow,
- and Kent W. Hunter
Genome Res. January 1, 2003 13: 118-121; doi:10.1101/gr.786403
....E. , Robinson E. , Sklar P. , et al. ( 2000 ) Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse. Nat. Genet. 24 : 381 – 386 . ↵ Mott R. , Flint J. ( 2002 ) Simultaneous detection and fine mapping of quantitative trait loci in mice using heterogeneous stocks. Genetics 160...
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Resource: GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
- Robyn L. Ball,
- Molly A. Bogue,
- Hongping Liang,
- Anuj Srivastava,
- David G. Ashbrook,
- Anna Lamoureux,
- Matthew W. Gerring,
- Alexander S. Hatoum,
- Matthew J. Kim,
- Hao He,
- Jake Emerson,
- Alexander K. Berger,
- David O. Walton,
- Keith Sheppard,
- Baha El Kassaby,
- Francisco Castellanos,
- Govindarajan Kunde-Ramamoorthy,
- Lu Lu,
- John Bluis,
- Sejal Desai,
- Beth A. Sundberg,
- Gary Peltz,
- Zhuoqing Fang,
- Gary A. Churchill,
- Robert W. Williams,
- Arpana Agrawal,
- Carol J. Bult,
- Vivek M. Philip,
- and Elissa J. Chesler
Genome Res. January 2024 34: 145-159; Published in Advance January 30, 2024, doi:10.1101/gr.278157.123
...population, provide similar opportunities for data integration. C. elegans, Drosophila, and other organisms also have similar resource collections, including inbred panels, heterogenous stocks, and others. The applicability of imputation to derive full sequence from genotype information is well established...
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Review: Contrasting genetic architectures in different mouse reference populations used for studying complex traits
- David A. Buchner and
- Joseph H. Nadeau
Genome Res. June 2015 25: 775-791; Published in Advance May 7, 2015, doi:10.1101/gr.187450.114
...; Durrant et al. 2011; Foulds Mathes et al. 2011; Philip et al. 2011; Kelada et al. 2012, 2014; Thaisz et al. 2012; Ferris et al. 2013; Ferguson Table 1. Websites providing details for resources to study complex traits in mice Panel Websites Heterogeneous stock http...

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