Searching journal content for articles similar to Huang et al. 13 (9): 2164.

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  1. Methods: Physical map-assisted whole-genome shotgun sequence assemblies
    • René L. Warren,
    • Dmitry Varabei,
    • Darren Platt,
    • Xiaoqiu Huang,
    • David Messina,
    • Shiaw-Pyng Yang,
    • James W. Kronstad,
    • Martin Krzywinski,
    • Wesley C. Warren,
    • John W. Wallis,
    • LaDeana W. Hillier,
    • Asif T. Chinwalla,
    • Jacqueline E. Schein,
    • Asim S. Siddiqui,
    • Marco A. Marra,
    • Richard K. Wilson,
    • and Steven J.M. Jones
    Genome Res. June 2006 16: 768-775; doi:10.1101/gr.5090606
    ...Physical map-assisted whole-genome shotgun sequence assemblies Map-assisted WGAs René L. Warren 1 , 6 , Dmitry Varabei 1 , 6 , Darren Platt 4 , Xiaoqiu Huang 3 , David Messina 2 , Shiaw-Pyng Yang 2 , James W. Kronstad 5...
  2. Methods: Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
    • Vincent Magrini,
    • Wesley C. Warren,
    • John Wallis,
    • William E. Goldman,
    • Jian Xu,
    • Elaine R. Mardis,
    • and John D. McPherson
    Genome Res. August 2004 14: 1603-1609; doi:10.1101/gr.2361404
    ...and G186A-R Whole Genome Shotgun (WGS) PCAP and ARACHNE assemblies are available for BLASTIN searches. http://.wustl.edu/projects/hcapsulatum/index.php?fpc=1 ; An additional link where the Histoplasma capsulatum FPC database can be downloaded. http://www.sanger.ac.uk/Software/Image ; A link to IMAGE...
  3. Methods: Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes
    • Antoine Barrière,
    • Shiaw-Pyng Yang,
    • Elizabeth Pekarek,
    • Cristel G. Thomas,
    • Eric S. Haag,
    • and Ilya Ruvinsky
    Genome Res. March 2009 19: 470-480; Published in Advance February 9, 2009, doi:10.1101/gr.081851.108
    .... Here we show that despite this inbreeding, the heterozygous fraction of the whole genome shotgun assemblies of three gonochoristic Caenorhabditis species, C. brenneri , C. remanei , and C. japonica , is considerable. We first demonstrate experimentally that independently assembled sequence...
  4. RESOURCE: The Atlas Genome Assembly System
    • Paul Havlak,
    • Rui Chen,
    • K. James Durbin,
    • Amy Egan,
    • Yanru Ren,
    • Xing-Zhi Song,
    • George M. Weinstock,
    • and Richard A. Gibbs
    Genome Res. April 2004 14: 721-732; doi:10.1101/gr.2264004
    ..., Baylor College of Medicine, Houston, Texas 77030, USA Abstract Atlas is a suite of programs developed for assembly of genomes by a “combined approach” that uses DNA sequence reads from both BACs and whole-genome shotgun (WGS) libraries. The BAC clones afford advantages of localized assembly...
  5. Methods: Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
    • Jade P. Vinson,
    • David B. Jaffe,
    • Keith O'Neill,
    • Elinor K. Karlsson,
    • Nicole Stange-Thomann,
    • Scott Anderson,
    • Jill P. Mesirov,
    • Nori Satoh,
    • Yutaka Satou,
    • Chad Nusbaum,
    • Bruce Birren,
    • James E. Galagan,
    • and Eric S. Lander
    Genome Res. August 2005 15: 1127-1135; doi:10.1101/gr.3722605
    ...of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan Abstract Whole-genome assembly is now used routinely to obtain high-quality draft sequence for the genomes of species with low levels of polymorphism. However, genome assembly remains extremely challenging for highly...
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