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  1. RESOURCE: The Pseudomonas aeruginosa PA01 Gene Collection
    • Joshua LaBaer,
    • QingQing Qiu,
    • Anukanth Anumanthan,
    • Wenhong Mar,
    • Dongmei Zuo,
    • T.V.S. Murthy,
    • Helen Taycher,
    • Allison Halleck,
    • Eugenie Hainsworth,
    • Stephen Lory,
    • and Leonardo Brizuela
    Genome Res. October 15, 2004 14: 2190-2200; doi:10.1101/gr.2482804
    ...) in protein expression-ready format (i.e., include only coding sequences); (4) catalogued and trackable—allowing for the rapid re-array of relevant subsets of clones as needed; and (5) clonally isolated and sequence verified—allowing the unambiguous assignment of function or property to a specific coding...
  2. RESOURCE: Human ORFeome Version 1.1: A Platform for Reverse Proteomics
    • Jean-François Rual,
    • Tomoko Hirozane-Kishikawa,
    • Tong Hao,
    • Nicolas Bertin,
    • Siming Li,
    • Amélie Dricot,
    • Ning Li,
    • Jennifer Rosenberg,
    • Philippe Lamesch,
    • Pierre-Olivier Vidalain,
    • Tracey R. Clingingsmith,
    • James L. Hartley,
    • Dominic Esposito,
    • David Cheo,
    • Troy Moore,
    • Blake Simmons,
    • Reynaldo Sequerra,
    • Stephanie Bosak,
    • Lynn Doucette-Stamm,
    • Christian Le Peuch,
    • Jean Vandenhaute,
    • Michael E. Cusick,
    • Joanna S. Albala,
    • David E. Hill,
    • and Marc Vidal
    Genome Res. October 15, 2004 14: 2128-2135; doi:10.1101/gr.2973604
    ...interactions and of biochemical reactions, using reverse proteomics approaches ( Walhout and Vidal 2001 ). Reverse proteomics projects, in turn, require the cloning and manipulation of large numbers of protein-encoding sequences, or open reading frames (ORFs). Reverse proteomics approaches such as high...
  3. Article: High-resolution DNA-binding specificity analysis of yeast transcription factors
    • Cong Zhu,
    • Kelsey J.R.P. Byers,
    • Rachel Patton McCord,
    • Zhenwei Shi,
    • Michael F. Berger,
    • Daniel E. Newburger,
    • Katrina Saulrieta,
    • Zachary Smith,
    • Mita V. Shah,
    • Mathangi Radhakrishnan,
    • Anthony A. Philippakis,
    • Yanhui Hu,
    • Federico De Masi,
    • Marcin Pacek,
    • Andreas Rolfs,
    • Tal Murthy,
    • Joshua LaBaer,
    • and Martha L. Bulyk
    Genome Res. April 2009 19: 556-566; Published in Advance January 21, 2009, doi:10.1101/gr.090233.108
    .... 2005 ). However, even in S. cerevisiae , in which transcriptional regulation has been studied extensively both computationally ( Hughes et al. 2000a ; Cliften et al. 2003 ; Kellis et al. 2003 ; Beer and Tavazoie 2004 ) and experimentally using traditional and high-throughput genomic approaches (for...
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