Searching journal content for articles similar to Hristov et al. 34 (10): 1610.

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  1. Research: Genome-wide map of regulatory interactions in the human genome
    • Nastaran Heidari,
    • Douglas H. Phanstiel,
    • Chao He,
    • Fabian Grubert,
    • Fereshteh Jahanbani,
    • Maya Kasowski,
    • Michael Q. Zhang,
    • and Michael P. Snyder
    Genome Res. December 2014 24: 1905-1917; Published in Advance September 16, 2014, doi:10.1101/gr.176586.114
    ...is that ours was carried out in one of the most well-characterized cell lines available. Extensive integration with hundreds of existing ChIP-seq and RNA-seq data sets allowed novel insights into the combination of factors involved in interactions, the effect of distal chromatin state on transcription...
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  2. Research: Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
    • Yotam Drier,
    • Michael S. Lawrence,
    • Scott L. Carter,
    • Chip Stewart,
    • Stacey B. Gabriel,
    • Eric S. Lander,
    • Matthew Meyerson,
    • Rameen Beroukhim,
    • and Gad Getz
    Genome Res. February 2013 23: 228-235; Published in Advance November 2, 2012, doi:10.1101/gr.141382.112
    ...context-specific pattern also holds in lung cancer, ovarian cancer, and melanoma (Greenman et al. 2007; Rubin and Green 2009). Mutations in that context are consistent with a DNA deamination by apolipoprotein B mRNA-editing enzymes (APOBEC1 and several APOBEC3 proteins) (Beale et al. 2004; Bishop et al...
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  3. Research: Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
    • Kevin Van Bortle,
    • Edward Ramos,
    • Naomi Takenaka,
    • Jingping Yang,
    • Jessica E. Wahi,
    • and Victor G. Corces
    Genome Res. November 2012 22: 2176-2187; Published in Advance June 21, 2012, doi:10.1101/gr.136788.111
    ...on the fourth day. Also, multiple amplicons targeting each gene for knockdown were used, with the exception of BEAF-32, which only used one. RNA was then isolated from the Kc cells using the Qiagen RNeasy kit (catalog #74104) with on-column DNA digestion (catalog #79254) following the manufacturer’s protocols...
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