Searching journal content for articles similar to Howald et al. 22 (9): 1698.

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  1. Perspective: What does our genome encode?
    • John A. Stamatoyannopoulos
    Genome Res. September 2012 22: 1602-1611; doi:10.1101/gr.146506.112
    ...originating from enhancer elements was first described over 20 years ago (Tuan et al. 1992) and has recently reemerged through analysis of deep RNA-seq data (Kim et al. 2012). This phenomenon has now been extensively documented by ENCODE (Djebali et al. 2012a) and is detected predominantly at distal DNase I...
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  2. Commentary: Decoding the human genome
    • Kelly A. Frazer
    Genome Res. September 2012 22: 1599-1601; doi:10.1101/gr.146175.112
    ..., Derrien T, Walters N, Gonzalez JM, Frankish A, Aken BL, Hourlier T, et al. 2012. Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human . Genome Res (this issue). doi: 10.1101/gr.134478.111. Karnani N, Taylor C, Malhotra A, Dutta A. 2007. Pan-S replication patterns...
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  3. Perspective: Toward mapping the biology of the genome
    • Stephen Chanock
    Genome Res. September 2012 22: 1612-1615; doi:10.1101/gr.144980.112
    ...Acad Sci 106: 9362–9367. Howald C, Tanzer A, Chrast J, Kokocinski F, Derrien T, Walters N, Gonzalez JM, Frankish A, Aken BL, Hourlier T, et al. 2012. Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human . Genome Res (this issue). doi: 10.1101/gr.134478.111. Hudson TJ...
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  4. Resource: GENCODE: The reference human genome annotation for The ENCODE Project
    • Jennifer Harrow,
    • Adam Frankish,
    • Jose M. Gonzalez,
    • Electra Tapanari,
    • Mark Diekhans,
    • Felix Kokocinski,
    • Bronwen L. Aken,
    • Daniel Barrell,
    • Amonida Zadissa,
    • Stephen Searle,
    • If Barnes,
    • Alexandra Bignell,
    • Veronika Boychenko,
    • Toby Hunt,
    • Mike Kay,
    • Gaurab Mukherjee,
    • Jeena Rajan,
    • Gloria Despacio-Reyes,
    • Gary Saunders,
    • Charles Steward,
    • Rachel Harte,
    • Michael Lin,
    • Cédric Howald,
    • Andrea Tanzer,
    • Thomas Derrien,
    • Jacqueline Chrast,
    • Nathalie Walters,
    • Suganthi Balasubramanian,
    • Baikang Pei,
    • Michael Tress,
    • Jose Manuel Rodriguez,
    • Iakes Ezkurdia,
    • Jeltje van Baren,
    • Michael Brent,
    • David Haussler,
    • Manolis Kellis,
    • Alfonso Valencia,
    • Alexandre Reymond,
    • Mark Gerstein,
    • Roderic Guigó,
    • and Tim J. Hubbard
    Genome Res. September 2012 22: 1760-1774; doi:10.1101/gr.135350.111
    ...of annotation. Level 1 highlights transcripts that have been manually annotated and experimentally validated by RT-PCR-seq (Howald et al. 2012), as well as pseudogenes that have been validated by three-way consensus, namely, that have been independently validated by three different strategies. Level 2 indicates...
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  5. Perspective: Functional transcriptomics in the post-ENCODE era
    • Jonathan M. Mudge,
    • Adam Frankish,
    • and Jennifer Harrow
    Genome Res. December 2013 23: 1961-1973; Published in Advance October 30, 2013, doi:10.1101/gr.161315.113
    ...functionality can be captured in gene annotation. The capture and annotation of transcript models Clearly, transcript capture precedes transcript annotation. Previously, transcripts were captured as cDNAs, mRNAs, and ESTs, whereas today RNA-seq methodologies predominate given their high-throughput nature...
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