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RESOURCE: The Genexpress IMAGE Knowledge Base of the Human Brain Transcriptome: A Prototype Integrated Resource for Functional and Computational Genomics
- Geneviève Piétu,
- Régine Mariage-Samson,
- Nicole-Adeline Fayein,
- Christiane Matingou,
- Eric Eveno,
- Rémi Houlgatte,
- Charles Decraene,
- Yves Vandenbrouck,
- Fariza Tahi,
- Marie-Dominique Devignes,
- Ute Wirkner,
- Wilhelm Ansorge,
- David Cox,
- Takahiro Nagase,
- Nobuo Nomura,
- and Charles Auffray
Genome Res. February 1, 1999 9: 195-209; doi:10.1101/gr.9.2.195
...Consortium ( Lennon et al. 1996 ). After the initial characterization of one-third of the first IMAGE Consortium cDNA library from infant brain ( Soares et al. 1994 ), we developed the Genexpress Index ( Houlgatte et al. 1995 ), a resource for gene discovery and the genic map of the human based on clustering...
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RESOURCE: The Genexpress IMAGE Knowledge Base of the Human Muscle Transcriptome: A Resource of Structural, Functional, and Positional Candidate Genes for Muscle Physiology and Pathologies
- Geneviève Piétu,
- Eric Eveno,
- Béatrice Soury-Segurens,
- Nicole-Adeline Fayein,
- Régine Mariage-Samson,
- Christiane Matingou,
- Elisabeth Leroy,
- Claude Dechesne,
- Sabine Krieger,
- Wilhelm Ansorge,
- Isabelle Reguigne-Arnould,
- David Cox,
- Anindya Dehejia,
- Mihael H. Polymeropoulos,
- Marie-Dominique Devignes,
- and Charles Auffray
Genome Res. December 1, 1999 9: 1313-1320; doi:10.1101/gr.9.12.1313
...mapping to chromosome 15q15 ( Fougerousse et al. 1994 ). Among the genes registered in the initial version of the Genexpress Index ( Auffray et al. 1995 ; Houlgatte et al. 1995 ) and mapped to this region ( Richard et al. 1994 ), one appeared to be expressed specifically in muscle, encoding the calpain 3...
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Letter: Alternative Gene Form Discovery and Candidate Gene Selection from Gene Indexing Projects
- John Burke,
- Hui Wang,
- Winston Hide,
- and Daniel B. Davison
Genome Res. March 1, 1998 8: 276-290; doi:10.1101/gr.8.3.276
...sequence database, the Expressed Gene Anatomy Database (EGAD; White and Kerlavage 1996). In loose gene indexing projects (of which UniGene, Merck Gene Index, and GenExpress are examples) sequences are grouped into common classes if they share overlap above a certain threshold. Sequence similarity searching...
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ARTICLE: Normalization and subtraction: two approaches to facilitate gene discovery.
- M F Bonaldo,
- G Lennon,
- and M B Soares
Genome Res. September 1996 6: 791-806; doi:10.1101/gr.6.9.791
.... 1995 . The Genexpress Index: A resource for gene discovery and genie map of the human . Genome Res. 5 : 272 – 304 . Johnston, S., Lee, J.H. and Ray. D.S. 1985 . High-level expression of M13 gene II protein from an inducible polycistronic messenger RNA. Gene 34 : 137 – 145 . Khan, A.S., Wilcox, A...
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ARTICLE: Toward the development of a gene index to the human genome: an assessment of the nature of high-throughput EST sequence data.
- J S Aaronson,
- B Eckman,
- R A Blevins,
- J A Borkowski,
- J Myerson,
- S Imran,
- and K O Elliston
Genome Res. September 1996 6: 829-845; doi:10.1101/gr.6.9.829
..., S. Lamy, B. and Auffray. C. 1995 . The Genexpress Index: A resource for gene discovery and the genie map of the human . Genome Res. 5 : 272 – 304 . Khan, A.S., , Wilcox, A.S. , Polymeropoulos, M.H. , Hopkins, J.A. , Stevens, T.J. , Robinson, M. , Orpana, A.K. , Sikela. J.M. Khan, A.S., Wilcox, A...
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ARTICLE: Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array.
- G Piétu,
- O Alibert,
- V Guichard,
- B Lamy,
- F Bois,
- E Leroy,
- R Mariage-Sampson,
- R Houlgatte,
- P Soularue,
- and C Auffray
Genome Res. June 1996 6: 492-503; doi:10.1101/gr.6.6.492
.... Tessier, A. Bentolila, S. Lamy, B. and Auffray. C. 1995 . The Genexpress Index: A resource for gene discovery and genie map of the human . Genome Res. 5 : 272 – 304 . Lee, N.H., , Wienstock, K.G. , Kirkness, E.F. , Earle-Hughes, J.A. , Fuldner, R.A. , Marmaros, S. , Glodek, A. , Gocayene, J.D. , Adams, M...
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RESOURCE: A Comprehensive Approach to Clustering of Expressed Human Gene Sequence: The Sequence Tag Alignment and Consensus Knowledge Base
- Robert T. Miller,
- Alan G. Christoffels,
- Chella Gopalakrishnan,
- John Burke,
- Andrey A. Ptitsyn,
- Tania R. Broveak,
- and Winston A. Hide
Genome Res. November 1, 1999 9: 1143-1155; doi:10.1101/gr.9.11.1143
...by UniGene ( Boguski et al. 1995 ; Schuler et al. 1996 ), the Genexpress Index ( Houlgatte et al. 1995 ), and the Merck Gene Index ( Williamson et al. 1995 ), groups sequences into clusters based on sequence overlap above a given alignment threshold, accepting only the longest representative of an index...
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METHODS: d2_cluster: A Validated Method for Clustering EST and Full-Length cDNA Sequences
- John Burke,
- Dan Davison,
- and Winston Hide
Genome Res. November 1, 1999 9: 1135-1142; doi:10.1101/gr.9.11.1135
...1997 , eds Miyano S. , Takagi T. ( Universal Academy Press Inc. Tokyo, Japan ), pp 187 – 196 . ↵ Houlgatte R. , Mariage-Samson R. , Duprat S. , Tesslier A. , Bentolila S. , Lamy B. , Auffray C. ( 1995 ) The GenExpress Index: A resource for gene discovery and the genic map of the human . Genome Res. 5...
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ARTICLE: 2006 expressed-sequence tags derived from human chromosome 7-enriched cDNA libraries.
- J W Touchman,
- G G Bouffard,
- L A Weintraub,
- J R Idol,
- L Wang,
- C M Robbins,
- J C Nussbaum,
- M Lovett,
- and E D Green
Genome Res. March 1997 7: 281-292; doi:10.1101/gr.7.3.281
...-Samson, R. Duprat, S. Tessier, A. Bentolila, S. Lamy, B. and Auffray. C. 1995 . The Genexpress Index: A resource for gene discovery and the genic map of the human . Genome Res. 5 : 272 – 304 . Hudson, T.J., , Stein, L.D. , Gerety, S.S. , Ma, J. , Castle, A.B. , Silva, J. , Slonim, D.K. , Baptista, R...
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RESOURCE: Inventory of High-Abundance mRNAs in Skeletal Muscle of Normal Men
- Stephen Welle,
- Kirti Bhatt,
- and Charles A. Thornton
Genome Res. May 1, 1999 9: 506-513; doi:10.1101/gr.9.5.506
.... , Bentolila S. , Lamy B. , Auffray C. ( 1995 ) The Genexpress index: A resource for gene discovery and the genic map of the human . Genome Res. 5 : 272 – 304 . ↵ Lanfranchi G. , Muraro T. , Caldara F. , Pacchioni B. , Pallavicini A. , Pandolfo D. , Toppo S. , Trevisan S. , Scarso S. , Valle G. ( 1996...

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