Searching journal content for articles similar to Hosono et al. 13 (5): 954.

Displaying results 1-10 of 22

For checked items

view abstracts
download to citation manager

Select this article
Research: Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling
- Lu Liu,
- He Chen,
- Cheng Sun,
- Jianyun Zhang,
- Juncheng Wang,
- Meijie Du,
- Jie Li,
- Lin Di,
- Jie Shen,
- Shuang Geng,
- Yuhong Pang,
- Yingying Luo,
- Chen Wu,
- Yusi Fu,
- Zhe Zheng,
- Jianbin Wang,
- and Yanyi Huang
Genome Res. January 2022 32: 44-54; Published in Advance December 28, 2021, doi:10.1101/gr.275453.121
..., Yusi Fu1, Zhe Zheng2, Jianbin Wang4 and Yanyi Huang1,7,8,9 1Biomedical Pioneering Innovation Center (BIOPIC) and Beijing Advanced Innovation Center for Genomics (ICG), School of Life Sciences, Peking University, Beijing 100871, China; 2National Clinical Research Center of Cardiovascular Diseases, State...
OPEN ACCESS ARTICLE
Select this article
Method: Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture
- Helena M.B. Seth-Smith,
- Simon R. Harris,
- Rachel J. Skilton,
- Frans M. Radebe,
- Daniel Golparian,
- Elena Shipitsyna,
- Pham Thanh Duy,
- Paul Scott,
- Lesley T. Cutcliffe,
- Colette O’Neill,
- Surendra Parmar,
- Rachel Pitt,
- Stephen Baker,
- Catherine A. Ison,
- Peter Marsh,
- Hamid Jalal,
- David A. Lewis,
- Magnus Unemo,
- Ian N. Clarke,
- Julian Parkhill,
- and Nicholas R. Thomson
Genome Res. May 2013 23: 855-866; Published in Advance March 22, 2013, doi:10.1101/gr.150037.112
...Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture Helena M.B. Seth-Smith 1 , 11 , Simon R. Harris 1 , Rachel J. Skilton 2 , Frans M. Radebe 3 , Daniel Golparian 4 , Elena Shipitsyna 5...
Select this article
Method: TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data
- Gavin Ha,
- Andrew Roth,
- Jaswinder Khattra,
- Julie Ho,
- Damian Yap,
- Leah M. Prentice,
- Nataliya Melnyk,
- Andrew McPherson,
- Ali Bashashati,
- Emma Laks,
- Justina Biele,
- Jiarui Ding,
- Alan Le,
- Jamie Rosner,
- Karey Shumansky,
- Marco A. Marra,
- C. Blake Gilks,
- David G. Huntsman,
- Jessica N. McAlpine,
- Samuel Aparicio,
- and Sohrab P. Shah
Genome Res. November 2014 24: 1881-1893; Published in Advance July 24, 2014, doi:10.1101/gr.180281.114
...TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data Gavin Ha 1 , 2 , Andrew Roth 1 , 2 , Jaswinder Khattra 1 , Julie Ho 3 , Damian Yap 1 , Leah M. Prentice 3...
OPEN ACCESS ARTICLE
Select this article
Method: Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations
- Jonathan S. Brammeld,
- Mia Petljak,
- Inigo Martincorena,
- Steven P. Williams,
- Luz Garcia Alonso,
- Alba Dalmases,
- Beatriz Bellosillo,
- Carla Daniela Robles-Espinoza,
- Stacey Price,
- Syd Barthorpe,
- Patrick Tarpey,
- Constantine Alifrangis,
- Graham Bignell,
- Joana Vidal,
- Jamie Young,
- Lucy Stebbings,
- Kathryn Beal,
- Michael R. Stratton,
- Julio Saez-Rodriguez,
- Mathew Garnett,
- Clara Montagut,
- Francesco Iorio,
- and Ultan McDermott
Genome Res. April 2017 27: 613-625; Published in Advance February 8, 2017, doi:10.1101/gr.213546.116
...) and the development of statistical approaches for recurrencedetection innoncoding regions. Such algorithms are currently under development as part of the PanCancer Analysis of Whole Genomes (http://pancancer.info/) which is undertaking the analysis of more than 2000 whole s. Thus, in due course as whole- sequencing...
OPEN ACCESS ARTICLE
Select this article
Methods: Two Methods of Whole-Genome Amplification Enable Accurate Genotyping Across a 2320-SNP Linkage Panel
- David L. Barker,
- Mark S.T. Hansen,
- A. Fawad Faruqi,
- Diane Giannola,
- Orlando R. Irsula,
- Roger S. Lasken,
- Martin Latterich,
- Vladimir Makarov,
- Arnold Oliphant,
- Jonathon H. Pinter,
- Richard Shen,
- Irina Sleptsova,
- William Ziehler,
- and Eric Lai
Genome Res. May 2004 14: 901-907; doi:10.1101/gr.1949704
...in a highly representative manner. Furthermore, we were able to achieve a SNP call rate of &gt;98% in both genomic and amplified DNA. The combination of whole-genome amplification and comprehensive SNP linkage analysis offers new opportunities for genetic analysis in clinical trials, disease association...
Select this article
METHODS: Whole Genome Analysis of Genetic Alterations in Small DNA Samples Using Hyperbranched Strand Displacement Amplification and Array–CGH
- José M. Lage,
- John H. Leamon,
- Tanja Pejovic,
- Stefan Hamann,
- Michelle Lacey,
- Deborah Dillon,
- Richard Segraves,
- Bettina Vossbrinck,
- Antonio González,
- Daniel Pinkel,
- Donna G. Albertson,
- Jose Costa,
- and Paul M. Lizardi
Genome Res. February 1, 2003 13: 294-307; doi:10.1101/gr.377203
...Whole Genome Analysis of Genetic Alterations in Small DNA Samples Using Hyperbranched Strand Displacement Amplification and Array–CGH José M. Lage 1 , John H. Leamon 1 , Tanja Pejovic 1 , Stefan Hamann 1 , Michelle Lacey 1 , Deborah...
Select this article
Letter: Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
- Stephen A. James,
- Michael J.T. O'Kelly,
- David M. Carter,
- Robert P. Davey,
- Alexander van Oudenaarden,
- and Ian N. Roberts
Genome Res. April 2009 19: 626-635; Published in Advance January 13, 2009, doi:10.1101/gr.084517.108
...Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing Stephen A. James 1 , 4 , Michael J.T. O'Kelly 2 , 4 5 , David M. Carter 3 , 6 , Robert P. Davey 1...
Select this article
Research: Confounding factors in assessing the enriched expression of somatic mutant alleles in bulk tumor samples
- Kohei Hagiwara,
- Andrew Thrasher,
- Nadezhda V. Terekhanova,
- and Jinghui Zhang
Genome Res. March 4, 2026 ; Published in Advance March 4, 2026, doi:10.1101/gr.281003.125
...novo indel detection because DNA-based indel detection is known to have a limited sensitivity of 40%–50% (Fig. 1, application workflow; Alioto et al. 2015; The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium 2020). We also evaluated the effectiveness of this approach for mutations rated...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization
- Yeun-Jun Chung,
- Jos Jonkers,
- Hannah Kitson,
- Heike Fiegler,
- Sean Humphray,
- Carol Scott,
- Sarah Hunt,
- Yuejin Yu,
- Ichiko Nishijima,
- Arno Velds,
- Henne Holstege,
- Nigel Carter,
- and Allan Bradley
Genome Res. January 2004 14: 188-196; doi:10.1101/gr.1878804
..., the resolving power of these analyses was limitedbecause high-density whole-genome mouse BAC microarrays were not available. We therefore developed a mouse BAC microarray containing 2803 unique BAC clones from mouse genomic libraries at 1-Mb intervals. For the general amplification of BAC clone DNA prior...
Select this article
Perspective: Unraveling the hidden complexity of cancer through long-read sequencing
- Qiuhui Li,
- Ayse G. Keskus,
- Justin Wagner,
- Michal B. Izydorczyk,
- Winston Timp,
- Fritz J. Sedlazeck,
- Alison P. Klein,
- Justin M. Zook,
- Mikhail Kolmogorov,
- and Michael C. Schatz
Genome Res. April 2025 35: 599-620; Published in Advance March 20, 2025, doi:10.1101/gr.280041.124
...Consortium (ICGC) (Zhang et al. 2019), and the Pan-Cancer Analysis of Whole Genomes (PCAWG) project (The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium 2020) to characterize thousands of cancers across dozens of cancer types. Building on these population-scale efforts, the Catalogue Of Somatic...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hosono et al. 13 (5): 954.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: