Searching journal content for articles similar to Hori et al. 31 (11): 1971.

Displaying results 1-10 of 36
For checked items
  1. Method: Combining DNA and protein alignments to improve genome annotation with LiftOn
    • Kuan-Hao Chao,
    • Jakob M. Heinz,
    • Celine Hoh,
    • Alan Mao,
    • Alaina Shumate,
    • Mihaela Pertea,
    • and Steven L. Salzberg
    Genome Res. February 2025 35: 311-325; Published in Advance December 27, 2024, doi:10.1101/gr.279620.124
    ...with the ribosomal DNA (rDNA) array, which occurs in many copies on the acrocentric Chromosomes 13, 14, 15, 21, and 22 (Agrawal and Ganley 2018; Nurk et al. 2022; Chao et al. 2023). Given this overlap with rDNA, we suspect that the source genes are not protein-coding genes, and manual curation would be required...
  2. Letter: Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing
    • Stephen A. James,
    • Michael J.T. O'Kelly,
    • David M. Carter,
    • Robert P. Davey,
    • Alexander van Oudenaarden,
    • and Ian N. Roberts
    Genome Res. April 2009 19: 626-635; Published in Advance January 13, 2009, doi:10.1101/gr.084517.108
    ...Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing Stephen A. James 1 , 4 , Michael J.T. O'Kelly 2 , 4 5 , David M. Carter 3 , 6 , Robert P. Davey 1...
  3. Research: Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome
    • Harsh G. Shukla,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
    ...examples like histone genes (Maxson et al. 1983), rDNA arrays (Hall et al. 2022), and immunoglobulin genes (Watson and Breden 2012). Tandem repeats are prone to rapid copy number changes mediated through mechanisms such as unequal crossing over, replication slippage, gene conversion, and intrachromatid...
    OPEN ACCESS ARTICLE
  4. Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
    • Jacopo Martelossi,
    • Jacopo Vujovic,
    • Yue Huang,
    • Alessia Tatti,
    • Kaiwei Xu,
    • Federico Puliga,
    • Yuanxue Chen,
    • Omar Rota Stabelli,
    • Fabrizio Ghiselli,
    • Xiaoping Zhang,
    • and Alessandra Zambonelli
    Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
    ...contigs, except for contigs 16 and 17, which show enrichment only at one end (Supplemental Fig. S2). These two contigs carry 45S rDNA loci at the ends lacking telomeric repeats (see Results section “45S rDNA genes are organized as a single tandem array with only one diverging locus dispersed throughout...
  5. LETTER: Human ribosomal RNA gene arrays display a broad range of palindromic structures
    • Sandrine Caburet,
    • Chiara Conti,
    • Catherine Schurra,
    • Ronald Lebofsky,
    • Stuart J. Edelstein,
    • and Aaron Bensimon
    Genome Res. August 2005 15: 1079-1085; Published in Advance July 15, 2005, doi:10.1101/gr.3970105
    ...-color hybridization on combed human DNA. The red probe is the 5′ EcoRI fragment B detected with Texas Red. The green probe is the 3′ fragment A detected with FITC. The image displays 10 canonical rDNA units in tandem, each composed of a dual fluorescent signal and the adjacent nonhybridizing spacer segments. ( C...
  6. ARTICLE: The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation
    • Nicholas R. Thomson,
    • Corin Yeats,
    • Kenneth Bell,
    • Matthew T.G. Holden,
    • Stephen D. Bentley,
    • Morag Livingstone,
    • Ana M. Cerdeño-Tárraga,
    • Barbara Harris,
    • Jon Doggett,
    • Doug Ormond,
    • Karen Mungall,
    • Kay Clarke,
    • Theresa Feltwell,
    • Zahra Hance,
    • Mandy Sanders,
    • Michael A. Quail,
    • Claire Price,
    • Bart G. Barrell,
    • Julian Parkhill,
    • and David Longbottom
    Genome Res. May 2005 15: 629-640; Published in Advance April 18, 2005, doi:10.1101/gr.3684805
    ...blue. The positions of the PZ region (green), pmp clusters (purple; numbered 1–4), tmh cluster (blue), and biotin biosynthetic operon (yellow) are shown as colored boxes on the DNA lines. All the s have been oriented at the origin of replication to start at the hemB gene. More detailed analysis...
  7. Research: Genome architecture marked by retrotransposons modulates predisposition to DNA methylation in cancer
    • Marcos R.H. Estécio,
    • Juan Gallegos,
    • Céline Vallot,
    • Ryan J. Castoro,
    • Woonbok Chung,
    • Shinji Maegawa,
    • Yasuhiro Oki,
    • Yutaka Kondo,
    • Jaroslav Jelinek,
    • Lanlan Shen,
    • Helge Hartung,
    • Peter D. Aplan,
    • Bogdan A. Czerniak,
    • Shoudan Liang,
    • and Jean-Pierre J. Issa
    Genome Res. October 2010 20: 1369-1382; Published in Advance August 17, 2010, doi:10.1101/gr.107318.110
    ...the homogeneously: While some genes are frequently found methylated in cancer, others are never or rarely targeted by such modification. The causes of selective predisposition to methylation are unknown, and twomain explanations have been proposed: (1) DNA methylation happens randomly, and cells with silencing...
  8. Review: The structure, function, and evolution of plant centromeres
    • Matthew Naish and
    • Ian R. Henderson
    Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
    ...the kinetochore(s) and attaches to spindle microtubules (Fig. 1A–D; Malik and Henikoff 2009; Melters et al. 2013; Naish et al. 2021). In monocentric plant s, the DNA sequences underlying the centromeres are frequently composed of megabase-scale tandem repeat arrays (Malik and Henikoff 2009; Melters et al. 2013...
    OPEN ACCESS ARTICLE
  9. LETTER: The Mosaic Structure of Human Pericentromeric DNA: A Strategy for Characterizing Complex Regions of the Human Genome
    • Juliann E. Horvath,
    • Stuart Schwartz,
    • and Evan E. Eichler
    Genome Res. June 1, 2000 10: 839-852; doi:10.1101/gr.10.6.839
    ...different classes of repetitive elements that are categorized based largely on their copy number and their mode of propagation ( Gardiner 1996 ; Vogt 1990 ). Two broad classes of repeats are generally recognized: interspersed and tandem repeat elements ( Brown 1999 ). Tandemly repeated DNA...
  10. RESEARCH: Arabidopsis thaliana Centromere Regions: Genetic Map Positions and Repetitive DNA Structure
    • Elaine K. Round,
    • Susan K. Flowers,
    • and Eric J. Richards
    Genome Res. November 1, 1997 7: 1045-1053; doi:10.1101/gr.7.11.1045
    ...: Evidence for localized homogeneous sequence domains within arrays of α-satellite DNA. J. Mol. Biol. 216 : 3 – 16 . ↵ Wevrick R. , Willard H.F. ( 1989 ) Long-range organization of tandem arrays of α satellite DNA at the centromeres of human chromosomes: High-frequency array-length polymorphism and meiotic...
For checked items

Search Results

Next 10 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research