Searching journal content for articles similar to Hong et al. 21 (11): 1905.

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  1. Research: Dynamic DNA N6-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus
    • Yongqiang Liu,
    • Junhua Niu,
    • Fei Ye,
    • Therese Solberg,
    • Borong Lu,
    • Chundi Wang,
    • Mariusz Nowacki,
    • and Shan Gao
    Genome Res. February 2024 34: 256-271; Published in Advance March 12, 2024, doi:10.1101/gr.278796.123
    ...such as feeding and locomotion (Gutiérrez et al. 1990, 2001; Kaur et al. 2019). Consequently, the process of encystation uses a highly complex array of gene expression alterations to produce a more resistant, differentiated state that enables the organism to maintain viability during variations in the habitat...
  2. Erratum: Erratum Genome Res. October 2012 22: 2088
    ...genome;22/10/2088 1088-9051 Erratum Erratum Genome Research 21: 1905–1915 (2011) Digital gene expression for non-model organisms Lewis Z. Hong, Jun Li, Anne Schmidt-Ku¨ntzel, Wesley C. Warren, and Gregory S. Barsh The right-hand side of Figure 1A depicts an EcoP15I 39 overhang rather than...
  3. Research: An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa
    • Djivan Prentout,
    • Olga Razumova,
    • Bénédicte Rhoné,
    • Hélène Badouin,
    • Hélène Henri,
    • Cong Feng,
    • Jos Käfer,
    • Gennady Karlov,
    • and Gabriel A.B. Marais
    Genome Res. February 2020 30: 164-172; Published in Advance February 7, 2020, doi:10.1101/gr.251207.119
    ...latifolia, a plant with young sex chromosomes. PLoS Biol 10: e1001308. doi:10.1371/journal.pbio.1001308 ↵Muyle A, Käfer J, Zemp N, Mousset S, Picard F, Marais GA. 2016. SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms. Genome Biol Evol 8: 2530–2543. doi:10.1093/gbe...
  4. Method: Optimization of de novo transcriptome assembly from next-generation sequencing data
    • Yann Surget-Groba and
    • Juan I. Montoya-Burgos
    Genome Res. October 2010 20: 1432-1440; Published in Advance August 6, 2010, doi:10.1101/gr.103846.109
    ...applied these two methods to assemble the transcriptome of the non-model catfish Loricaria gr . cataphracta . Using the Multiple- k and STM methods, the assembly increases in contiguity and in gene identification, showing that our methods clearly improve quality and can be widely used. The new methods...
  5. Research: Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions
    • Marina Naval-Sánchez,
    • Delphine Potier,
    • Lotte Haagen,
    • Máximo Sánchez,
    • Sebastian Munck,
    • Bram Van de Sande,
    • Fernando Casares,
    • Valerie Christiaens,
    • and Stein Aerts
    Genome Res. January 2013 23: 74-88; Published in Advance October 15, 2012, doi:10.1101/gr.140426.112
    ..., and optimizing the filtering and normalization steps, we found this technique to deliver accurate gene expression levels in D. melanogaster. The nonmodel species D. yakuba and D. virilis have a lower-quality annotation and therefore require annotation amendments toward the 39 end. Taking these annotation...
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