Searching journal content for articles similar to Hoffmann et al. 12 (1): 98.

Displaying results 1-10 of 69

For checked items

view abstracts
download to citation manager

Select this article
Research: Nuclease deficiencies alter plasma cell-free DNA methylation profiles
- Diana S.C. Han,
- Meng Ni,
- Rebecca W.Y. Chan,
- Danny K.L. Wong,
- Linda T. Hiraki,
- Stefano Volpi,
- Peiyong Jiang,
- Kathy O. Lui,
- K.C. Allen Chan,
- Rossa W.K. Chiu,
- and Y.M. Dennis Lo
Genome Res. November 2021 31: 2008-2021; Published in Advance September 1, 2021, doi:10.1101/gr.275426.121
...to interrogate whether or not DNASE1L3 could cut methylated CpGs. To do this, we first identified methylated and unmethylated CpGs. From a downloaded data set comprised of bisulfite sequencing of eight different mouse tissues (bone marrow, thymus, spleen, kidney, heart, liver, large intestines, small intestines...
OPEN ACCESS ARTICLE
Select this article
Method: Gene prediction in the immunoglobulin loci
- Vikram Sirupurapu,
- Yana Safonova,
- and Pavel A. Pevzner
Genome Res. June 2022 32: 1152-1169; Published in Advance May 11, 2022, doi:10.1101/gr.276676.122
...immune system. However, because the standard gene finding algorithms are not suitable for predicting IG genes, they have been semimanually annotated in very few species. We developed the IGDetective algorithm for predicting IG genes and applied it to species with the assembled IG loci. IGDetective...
Select this article
Research: Hydroxycarbamide effects on DNA methylation and gene expression in myeloproliferative neoplasms
- Stephania Contreras Castillo,
- Bertille Montibus,
- Azucena Rocha,
- Will Duke,
- Ferdinand von Meyenn,
- Donal McLornan,
- Claire Harrison,
- Ann Mullally,
- Reiner Schulz,
- and Rebecca J. Oakey
Genome Res. August 2021 31: 1381-1394; Published in Advance July 9, 2021, doi:10.1101/gr.270066.120
...regulator gene SPI1 and its distal binding sites, which HC is able to restore to normal levels.Myeloproliferative neoplasms (MPNs) are a heterogenous group of hematological disorders characterized by uncontrolled proliferation of hematopoietic stem and progenitor cells in the bone marrow and peripheral...
Select this article
Research: A KMT2A-AFF1 gene regulatory network highlights the role of core transcription factors and reveals the regulatory logic of key downstream target genes
- Joe R. Harman,
- Ross Thorne,
- Max Jamilly,
- Marta Tapia,
- Nicholas T. Crump,
- Siobhan Rice,
- Ryan Beveridge,
- Edward Morrissey,
- Marella F.T.R. de Bruijn,
- Irene Roberts,
- Anindita Roy,
- Tudor A. Fulga,
- and Thomas A. Milne
Genome Res. July 2021 31: 1159-1173; Published in Advance June 4, 2021, doi:10.1101/gr.268490.120
...patients with a range of chromosomal abnormalities (The Cancer Genome Atlas Research Network 2013), and hematopoietic stem and progenitor cell (HSPC) populations and B cells from normal fetal bone marrow (FBM) (O'Byrne et al. 2019) to generate individual patient-specific subnetworks derived from our SEM...
OPEN ACCESS ARTICLE
Select this article
Research: Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites
- Amber Hogart,
- Jens Lichtenberg,
- Subramanian S. Ajay,
- Stacie Anderson,
- NIH Intramural Sequencing Center,
- Elliott H. Margulies,
- and David M. Bodine
Genome Res. August 2012 22: 1407-1418; Published in Advance June 8, 2012, doi:10.1101/gr.132878.111
...provides insight into the interplay between DNA methylation and transcriptional networks that are involved in hematopoietic differentiation. Methods Enrichment of primary mouse cells Hematopoietic stem cells and common myeloid progenitor cells were harvested from adult female C57BL/6 bone marrow. After...
Select this article
LETTER: Divergence of Spatial Gene Expression Profiles Following Species-Specific Gene Duplications in Human and Mouse
- Lukasz Huminiecki and
- Kenneth H. Wolfe
Genome Res. October 2004 14: 1870-1879; doi:10.1101/gr.2705204
...adult cell-type eosinophils (immune cells infiltrating other tissues). However, we also found expression in immune and blood progenitor tissues such as bone marrow, CD34+ cells from cord blood, and fetal liver and spleen. mR-5 was a sole exception, not being expressed in any of the immune tissues. View...
Select this article
LETTER: Cloning, Characterization, and Mapping of a Murine Promiscuous Chemokine Receptor Gene: Homolog of the Human Duffy Gene
- Hong Luo,
- Asok Chaudhuri,
- Kenneth R. Johnson,
- Kuldeep Neote,
- Valerie Zbrzezna,
- Yu He,
- and A. Oscar Pogo
Genome Res. September 1, 1997 7: 932-941; doi:10.1101/gr.7.9.932
...in mouse provides a tool to gain further insights into the role of the human Duffy gene FY. RESULTS AND DISCUSSION Sequence Analysis of Dfy and Bone Marrow cDNA Nucleotide analysis of Dfy and bone marrow cDNA indicated that the structure of Dfy consists of two exons and a single intron (Fig. 1 A). Exon 1...
Select this article
ARTICLE: Identification of mouse Duffy Antigen Receptor for Chemokines (Darc) as a BMD QTL gene
- Bouchra Edderkaoui,
- David J. Baylink,
- Wesley G. Beamer,
- Jon E. Wergedal,
- Ryan Porte,
- Asok Chaudhuri,
- and Subburaman Mohan
Genome Res. May 2007 17: 577-585; Published in Advance April 6, 2007, doi:10.1101/gr.6009507
...isolation and real-time PCR analyses We isolated total RNA from femurs without bone marrow following the protocol supplied by Life Technologies Company using Trizol reagent. Since the BMD phenotype was analyzed in 16-wk-old female mice, only female mice 14 wk of age were used for gene expression studies...
Select this article
Methods: Customized Molecular Phenotyping by Quantitative Gene Expression and Pattern Recognition Analysis
- Shreeram Akilesh,
- Daniel J. Shaffer,
- and Derry Roopenian
Genome Res. July 2003 13: 1719-1727; doi:10.1101/gr.533003
..., and undergo apoptotic cell death. C57BL/6J-derived bone marrow and spleen cells cause acute GVHD when transferred into lethally irradiated allogenic male 129P3/J recipients ( Korngold and Sprent 1983 ). To understand the transcriptional changes associated with GVHD, we sampled and analyzed peripheral blood...
Select this article
LETTER: The Mouse Aire Gene: Comparative Genomic Sequencing, Gene Organization, and Expression
- Karin Blechschmidt,
- Michal Schweiger,
- Karin Wertz,
- Richard Poulson,
- Hoang-My Christensen,
- Andre Rosenthal,
- Hans Lehrach,
- and Marie-Laure Yaspo
Genome Res. February 1, 1999 9: 158-166; doi:10.1101/gr.9.2.158
..., direct sequencing of uncloned RT–PCR products generated from a panel of tissues (see Methods) identified the type II transcript in spleen and bone marrow (data not shown). However, our data did not address whether type I and type III isoforms were conserved. View this table: In this window In a new...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hoffmann et al. 12 (1): 98.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: