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Research: Temporal mapping of CEBPA and CEBPB binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries
- Janus Schou Jakobsen,
- Johannes Waage,
- Nicolas Rapin,
- Hanne Cathrine Bisgaard,
- Fin Stolze Larsen,
- and Bo Torben Porse
Genome Res. April 2013 23: 592-603; Published in Advance February 12, 2013, doi:10.1101/gr.146399.112
...by our computational analysis. We find our analysis to be supported as the E2F1, KLF4, and MYC factor bound regions overlap significantly more with A regions, while FOXA2 and ONECUT1 preferentially bind C regions (Fig. 4E; Supplemental Methods). Finally, we tested co-occupancy of CEBPs and several...
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Research: Epigenetic switch involved in activation of pioneer factor FOXA1-dependent enhancers
- Aurélien A. Sérandour,
- Stéphane Avner,
- Frédéric Percevault,
- Florence Demay,
- Maud Bizot,
- Céline Lucchetti-Miganeh,
- Frédérique Barloy-Hubler,
- Myles Brown,
- Mathieu Lupien,
- Raphaël Métivier,
- Gilles Salbert,
- and Jérôme Eeckhoute
Genome Res. April 2011 21: 555-565; Published in Advance January 13, 2011, doi:10.1101/gr.111534.110
...performed in both MDA-control and MDA-FOXA1 cells to determine H3K4me1, 2, and 3 levels at FOXA1-binding sites validated in panel C. Fold enrichments relative to negative control regions are indicated. Results are from three independent experiments. Se´randour et al. 558 Genome Research www..org MDA-MB231...

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