Searching journal content for articles similar to Ho et al. 27 (12): 2108.

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  1. Resource: Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes
    • Timothy J. Durham,
    • Riza M. Daza,
    • Louis Gevirtzman,
    • Darren A. Cusanovich,
    • Olubusayo Bolonduro,
    • William Stafford Noble,
    • Jay Shendure,
    • and Robert H. Waterston
    Genome Res. October 2021 31: 1952-1969; Published in Advance April 22, 2021, doi:10.1101/gr.271791.120
    ...et al. 2017; Jänes et al. 2018; Kudron et al. 2018). Collectively, these studies have identified tens of thousands of chromatin accessibility regions and transcription factor (TF) binding sites, using DNase-seq (Ho et al. 2017), ATAC-seq (Daugherty et al. 2017; Jänes et al. 2018), and ChIP-seq (Araya...
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  2. Method: Evidence of widespread, independent sequence signature for transcription factor cobinding
    • Manqi Zhou,
    • Hongyang Li,
    • Xueqing Wang,
    • and Yuanfang Guan
    Genome Res. February 2021 31: 265-278; Published in Advance December 10, 2020, doi:10.1101/gr.267310.120
    ..., and the endpoint of the arrow represents the validation data set. (D) DNase-seq-based features. Quantile normalization was applied to the original reads to eliminate experimental biases. In the plot, the dashed line is the values after quantile normalization and the solid line is the original reads. (E) DNA...
  3. Resource: High-resolution mapping of open chromatin in the rice genome
    • Wenli Zhang,
    • Yufeng Wu,
    • James C. Schnable,
    • Zixian Zeng,
    • Michael Freeling,
    • Gregory E. Crawford,
    • and Jiming Jiang
    Genome Res. January 2012 22: 151-162; Published in Advance November 22, 2011, doi:10.1101/gr.131342.111
    ...) and the Epigenomics Roadmap (Bernstein et al. 2010) in humans and in the modENCODE projects in Caenorhabditis elegans and Drosophila melanogaster (Gerstein et al. 2010; Roy et al. 2010), has been initiated only in few species. Active regulatory DNA elements, such as promoter and enhancers, interact with regulatory...
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