Searching journal content for articles similar to Hillier et al. 19 (4): 657.

Displaying results 1-10 of 42

For checked items

view abstracts
download to citation manager

Select this article
Perspective: Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation
- Carolina Monzó,
- Adam Frankish,
- and Ana Conesa
Genome Res. April 2025 35: 583-592; Published in Advance March 3, 2025, doi:10.1101/gr.279865.124
...Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus Hinxton, Cambridge CB10 1SA, United Kingdom Corresponding author: ana.conesa@csic.esAbstractLong-read sequencing (LRS) technologies have revolutionized transcriptomic research by enabling the comprehensive sequencing of full...
OPEN ACCESS ARTICLE
Select this article
Resource: Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
- Runsheng Li,
- Xiaoliang Ren,
- Qiutao Ding,
- Yu Bi,
- Dongying Xie,
- and Zhongying Zhao
Genome Res. February 2020 30: 287-298; Published in Advance February 5, 2020, doi:10.1101/gr.251512.119
...These authors contributed equally to this work. Corresponding author: zyzhao@hkbu.edu.hkAbstractMassively parallel sequencing of the polyadenylated RNAs has played a key role in delineating transcriptome complexity, including alternative use of an exon, promoter, 5′ or 3′ splice site or polyadenylation site...
Select this article
Resource: The full-length transcriptome of C. elegans using direct RNA sequencing
- Nathan P. Roach,
- Norah Sadowski,
- Amelia F. Alessi,
- Winston Timp,
- James Taylor,
- and John K. Kim
Genome Res. February 2020 30: 299-312; Published in Advance February 5, 2020, doi:10.1101/gr.251314.119
...nanopore-based direct RNA sequencing to characterize the developmental polyadenylated transcriptome of C. elegans. Taking advantage of long reads spanning the full length of mRNA transcripts, we provide support for 23,865 splice isoforms across 14,611 genes, without the need for computational...
OPEN ACCESS ARTICLE
Select this article
Resource: The time-resolved transcriptome of C. elegans
- Max E. Boeck,
- Chau Huynh,
- Lou Gevirtzman,
- Owen A. Thompson,
- Guilin Wang,
- Dionna M. Kasper,
- Valerie Reinke,
- LaDeana W. Hillier,
- and Robert H. Waterston
Genome Res. October 2016 26: 1441-1450; Published in Advance August 16, 2016, doi:10.1101/gr.202663.115
...The time-resolved transcriptome of C. elegans Max E. Boeck 1 , 2 , Chau Huynh 1 , Lou Gevirtzman 1 , Owen A. Thompson 1 , Guilin Wang 3 , Dionna M. Kasper 3 , Valerie Reinke 3 , LaDeana W. Hillier 1...
OPEN ACCESS ARTICLE
Select this article
Method: High-confidence coding and noncoding transcriptome maps
- Bo-Hyun You,
- Sang-Ho Yoon,
- and Jin-Wu Nam
Genome Res. June 2017 27: 1050-1062; Published in Advance April 10, 2017, doi:10.1101/gr.214288.116
...Sciences, Hanyang University, Seoul 133791, Republic of Korea The advent of high-throughput RNA sequencing (RNA-seq) has led to the discovery of unprecedentedly immense transcriptomes encoded by eukaryotic s. However, the transcriptome maps are still incomplete partly because they were mostly reconstructed...
OPEN ACCESS ARTICLE
Select this article
Resource: Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans
- Aaron C. Daugherty,
- Robin W. Yeo,
- Jason D. Buenrostro,
- William J. Greenleaf,
- Anshul Kundaje,
- and Anne Brunet
Genome Res. December 2017 27: 2096-2107; Published in Advance November 15, 2017, doi:10.1101/gr.226233.117
...Chromatin using sequencing. We optimized the ATAC-seq protocol for C. elegans by including a step of native nuclei isolation by mechanical homogenization before the transposition step (see Methods; Supplemental Extended Protocol). The low input requirements of ATAC-seq (several orders of magnitude less than...
OPEN ACCESS ARTICLE
Select this article
Research: Trans-splicing enhances translational efficiency in C. elegans
- Yu-Fei Yang,
- Xiaoqing Zhang,
- Xuehua Ma,
- Taolan Zhao,
- Qiushi Sun,
- Qing Huan,
- Shaohuan Wu,
- Zhuo Du,
- and Wenfeng Qian
Genome Res. September 2017 27: 1525-1535; Published in Advance July 6, 2017, doi:10.1101/gr.202150.115
...of translational efficiency. In Caenorhabditis elegans, the majority of genes are spliced leader (SL) trans-spliced (Blumenthal 2005; Allen et al. 2011). In this process, an SL RNA trims the 5′ UTR of pre-mRNA and then attaches a short (∼22 nucleotide [nt]) sequence to the 5′ terminus (Krause and Hirsh 1987...
Select this article
Research: Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
- Yingjia Shen,
- R.C. Venu,
- Kan Nobuta,
- Xiaohui Wu,
- Varun Notibala,
- Caghan Demirci,
- Blake C. Meyers,
- Guo-Liang Wang,
- Guoli Ji,
- and Qingshun Q. Li
Genome Res. September 2011 21: 1478-1486; Published in Advance August 3, 2011, doi:10.1101/gr.114744.110
...-scale DNA sequencing technologies have made the study of the polyadenylated transcriptome easier. The digital gene expression (DGE) protocol sequenced by massively parallel signature sequencing (MPSS) or Illumina’s GAII-based sequencing-by-synthesis (SBS) (Meyers et al. 2004c; Simon et al. 2009), called...
Select this article
Resource: Quantitative RNA-seq meta-analysis of alternative exon usage in C. elegans
- Nicolas J. Tourasse,
- Jonathan R.M. Millet,
- and Denis Dupuy
Genome Res. December 2017 27: 2120-2128; Published in Advance October 31, 2017, doi:10.1101/gr.224626.117
.... elegans. Nature 541: 102–106. ↵Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH. 2009. Massively parallel sequencing of the polyadenylated transcriptome of C. elegans. Genome Res 19: 657–666. ↵Jaillon O, Bouhouche K, Gout JF, Aury JM, Noel B, Saudemont B, Nowacki M, Serrano V, Porcel BM...
Select this article
Methods: Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
- Ryan D. Morin,
- Michael D. O’Connor,
- Malachi Griffith,
- Florian Kuchenbauer,
- Allen Delaney,
- Anna-Liisa Prabhu,
- Yongjun Zhao,
- Helen McDonald,
- Thomas Zeng,
- Martin Hirst,
- Connie J. Eaves,
- and Marco A. Marra
Genome Res. April 2008 18: 610-621; Published in Advance February 19, 2008, doi:10.1101/gr.7179508
...Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells Ryan D. Morin 1 , Michael D. O’Connor 2 , Malachi Griffith 1 , Florian Kuchenbauer 2 , Allen Delaney 1 , Anna-Liisa Prabhu 1...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hillier et al. 19 (4): 657.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: