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ARTICLE: Construction of a YAC contig encompassing the Usher syndrome type 1C and familial hyperinsulinism loci on chromosome 11p14-15.1.
- R Ayyagari,
- A Nestorowicz,
- Y Li,
- S Chandrasekharappa,
- C Chinault,
- P van Tuinen,
- R J Smith,
- J F Hejtmancik,
- and M A Permutt
Genome Res. June 1996 6: 504-514; doi:10.1101/gr.6.6.504
..., MA van Tuinen P S, Chandrasekharappa P van Tuinen R J, Smith Nestorowicz, A Hejtmancik J F R J 10.1101/gr.6.6.504 1088-9051 genome;6/6/504 Construction of a YAC contig encompassing the Usher syndrome type 1C and familial hyperinsulinism loci on chromosome 11p14-15.1. Construction of a YAC contig...
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ARTICLE: Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
- Hiroshi Kikuta,
- Mary Laplante,
- Pavla Navratilova,
- Anna Z. Komisarczuk,
- Pär G. Engström,
- David Fredman,
- Altuna Akalin,
- Mario Caccamo,
- Ian Sealy,
- Kerstin Howe,
- Julien Ghislain,
- Guillaume Pezeron,
- Philippe Mourrain,
- Staale Ellingsen,
- Andrew C. Oates,
- Christine Thisse,
- Bernard Thisse,
- Isabelle Foucher,
- Birgit Adolf,
- Andrea Geling,
- Boris Lenhard,
- and Thomas S. Becker
Genome Res. May 2007 17: 545-555; Published in Advance March 26, 2007, doi:10.1101/gr.6086307
...dystrophy mapped to 1q12–1q24 (OMIM%605549), where so far no gene has been assigned. Close to mirn9-5 is Usher syndrome type II and febrile seizures at 5q14 (OMIM#605472 and #604352). Some cases of these diseases have been assigned to mutations in the gene encoding G-coupled receptor MASS1 (for example, see...
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LETTER: A Preliminary Gene Map for the Van der Woude Syndrome Critical Region Derived from 900 kb of Genomic Sequence at 1q32–q41
- Brian C. Schutte,
- Bryan C. Bjork,
- Kevin B. Coppage,
- Margaret I. Malik,
- Simon G. Gregory,
- Deborah J. Scott,
- Luci M. Brentzell,
- Yoriko Watanabe,
- Michael J. Dixon,
- and Jeffrey C. Murray
Genome Res. January 1, 2000 10: 81-94; doi:10.1101/gr.10.1.81
...of penetrance. Previously, the VWS locus was mapped to a 1.6-cM region in 1q32–q41 between D1S491 and D1S205, and a 4.4-Mb contig of YAC clones of this region was constructed. In the current investigation, gene-based and anonymous STSs were developed from the existing physical map and were then used...
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Resource: Building better genome annotations across the tree of life
- Adam H. Freedman and
- Timothy B. Sackton
Genome Res. May 2025 35: 1261-1276; Published in Advance April 15, 2025, doi:10.1101/gr.280377.124
...- alignment is not feasible, inclusion of RNA-seq data will lead to substantial improvements to annotations.The reporting in 2001 of the first draft of the human sequence (Lander et al. 2001; Venter et al. 2001) ushered in a new era of -scale analysis, with a concomitant, rapid increase in the development...
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RESOURCE: A Subtracted cDNA Library from the Zebrafish (Danio rerio) Embryonic Inner Ear
- Roney S. Coimbra,
- Dominique Weil,
- Phillipe Brottier,
- Stéphane Blanchard,
- Michael Levi,
- Jean-Pierre Hardelin,
- Jean Weissenbach,
- and Christine Petit
Genome Res. June 1, 2002 12: 1007-1011; doi:10.1101/gr.227502
...A database was built that consists of 4694 sequence contigs of ∼18,000 reads of cDNAs isolated from the microdissected otocysts of zebrafish embryos at 20–30 hour postfertilization, following subtraction with a pool of liver cDNAs from adult fish. These sequences were compared with those of public databanks...
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ARTICLES: Regional assignment of 68 new human gene transcripts on chromosome 11.
- M F Rosier,
- I Reguigne-Arnould,
- P Couillin,
- M D Devignes,
- and C Auffray
Genome Res. August 1995 5: 60-70; doi:10.1101/gr.5.1.60
...integrated with the cytogenetic, genetic, and disease maps. Two eSTS markers have been further mapped with respect to a yeast artificial chromosome (YAC) contig close to the brain-derived neurotrophic factor (BDNF) gene and thus provide potential candidate genes for the mental retardation phenotype of WAGR...

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