Searching journal content for articles similar to Hegyi and Gerstein 11 (10): 1632.

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  1. Methods: Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
    • Haiyuan Yu,
    • Nicholas M. Luscombe,
    • Hao Xin Lu,
    • Xiaowei Zhu,
    • Yu Xia,
    • Jing-Dong J. Han,
    • Nicolas Bertin,
    • Sambath Chung,
    • Marc Vidal,
    • and Mark Gerstein
    Genome Res. June 2004 14: 1107-1118; doi:10.1101/gr.1774904
    ...Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs Haiyuan Yu 1 , Nicholas M. Luscombe 1 , Hao Xin Lu 1 , Xiaowei Zhu 1 , Yu Xia 1 , Jing-Dong J. Han 2 , Nicolas Bertin 2...
  2. LETTER: Protein structure and evolutionary history determine sequence space topology
    • Boris E. Shakhnovich,
    • Eric Deeds,
    • Charles Delisi,
    • and Eugene Shakhnovich
    Genome Res. March 2005 15: 385-392; doi:10.1101/gr.3133605
    ....I. 2002 . From knowledge-based potentials to combinatorial lead design in silico. Acc. Chem. Res. 35 : 261 -269. ↵ Hegyi, H. and Gerstein, M. 2001 . Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins. Genome Res. 11 : 1632 -1640. ↵ Holm, L. and Sander, C. 1993...
  3. ARTICLE: Structural Characterization of the Human Proteome
    • Arne Müller,
    • Robert M. MacCallum,
    • and Michael J.E. Sternberg
    Genome Res. November 1, 2002 12: 1625-1641; doi:10.1101/gr.221202
    ...to these characterized motifs/domains, suggestion for a functional annotation comes from a homology to a previously functionally annotated sequence. However, transfer of function via an identified homology is problematic and the extent of the difficulty has been recently quantified (e.g., Devos and Valencia 2000...
  4. METHODS: Predicting Gene Ontology Functions from ProDom and CDD Protein Domains
    • Jonathan Schug,
    • Sharon Diskin,
    • Joan Mazzarelli,
    • Brian P. Brunk,
    • and Christian J. Stoeckert, Jr.
    Genome Res. April 1, 2002 12: 648-655; doi:10.1101/gr.222902
    ...15 : 228 – 233 . ↵ Gene Ontology Consortium ( 2001 ) Creating the gene ontology resource: Design and implementation. Genome Res. 11 : 1425 – 1433 . ↵ Hegyi H. , Gerstein M. ( 2001 ) Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins. Genome Res. 11 : 1632...
  5. ARTICLE: Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content
    • Berend Snel,
    • Peer Bork,
    • and Martijn A. Huynen
    Genome Res. January 1, 2002 12: 17-25; Published in Advance December 14, 2001, doi:10.1101/gr.176501
    ...-Delbrück-Centrum for Molecular Medicine, 13122 Berlin-Buch, Germany Abstract In the course of evolution, genomes are shaped by processes like gene loss, gene duplication, horizontal gene transfer, and gene genesis (the de novo origin of genes). Here we reconstruct the gene content of ancestral Archaea...
  6. LETTER: Comparison of the Small Molecule Metabolic Enzymes of Escherichia coli and Saccharomyces cerevisiae
    • Oliver Jardine,
    • Julian Gough,
    • Cyrus Chothia,
    • and Sarah A. Teichmann
    Genome Res. June 1, 2002 12: 916-929; doi:10.1101/gr.228002
    ...or fission. New genes for an existing function could be acquired by horizontal transfer or functional displacement of one gene by another within a . In addition, many new genes have arisen by duplication and divergence to produce new enzymatic functions and pathways. Until now, investigations...
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