Searching journal content for articles similar to Hedges et al. 14 (6): 1068.

Displaying results 1-10 of 24

For checked items

view abstracts
download to citation manager

Select this article
Article: Diverse cis factors controlling Alu retrotransposition: What causes Alu elements to die?
- Matthew S. Comeaux,
- Astrid M. Roy-Engel,
- Dale J. Hedges,
- and Prescott L. Deininger
Genome Res. April 2009 19: 545-555; Published in Advance March 9, 2009, doi:10.1101/gr.089789.108
...or heterogeneity that eliminates its activity. Thus, even though certain characteristics between old and young Alu subfamily members may look similar, it may be that all of the features necessary for activity are present only among a small group of the very youngest elements, those for which selection has not had...
OPEN ACCESS ARTICLE
Select this article
LETTER: Active Alu retrotransposons in the human genome
- E. Andrew Bennett,
- Heiko Keller,
- Ryan E. Mills,
- Steffen Schmidt,
- John V. Moran,
- Oliver Weichenrieder,
- and Scott E. Devine
Genome Res. December 2008 18: 1875-1883; Published in Advance October 3, 2008, doi:10.1101/gr.081737.108
...subfamilies ( Wang et al. 2006 ). Given the range of activity levels observed among Alu Y subfamilies, the diagnostic base changes that define these subfamilies appear to have affected the mobilization efficiencies of these elements. Overall, our data indicate that the subfamily status of a given Alu copy...
Select this article
Letter: Comparative analysis of Alu repeats in primate genomes
- George E. Liu,
- Can Alkan,
- Lu Jiang,
- Shaying Zhao,
- and Evan E. Eichler
Genome Res. May 2009 19: 876-885; doi:10.1101/gr.083972.108
...also been used to clarify relationships among New World monkeys (NWM), Old World monkeys (OWM), and the human–chimpanzee–gorilla trichotomy (Salem et al. 2003; Ray and Batzer 2005; Ray et al. 2005; Xing et al. 2005). Alu elements in human lineage have been extensively characterized (Batzer...
Select this article
LETTER: Under the genomic radar: The Stealth model of Alu amplification
- Kyudong Han,
- Jinchuan Xing,
- Hui Wang,
- Dale J. Hedges,
- Randall K. Garber,
- Richard Cordaux,
- and Mark A. Batzer
Genome Res. May 2005 15: 655-664; doi:10.1101/gr.3492605
...synthetic mammalian retrotransposon. Nature 429 : 314 –318. ↵ Hedges, D.J., Callinan, P.A., Cordaux, R., Xing, J., Barnes, E., and Batzer, M.A. 2004 . Differential Alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res. 14 : 1068 –1075. ↵ Jurka, J. 1993 . A new subfamily...
Select this article
Research: A matter of life or death: How microsatellites emerge in and vanish from the human genome
- Yogeshwar D. Kelkar,
- Kristin A. Eckert,
- Francesca Chiaromonte,
- and Kateryna D. Makova
Genome Res. December 2011 21: 2038-2048; Published in Advance October 12, 2011, doi:10.1101/gr.122937.111
..., chimpanzee, and orangutan were likely acquired due to insertion of TEs ‘‘upon arrival’’ (12,794 out of 35,224 loci) (Fig. 4), with approximately equal contribution of Alus and L1s (6521 and 6273 loci, respectively). Additionally, among microsatellite births and deaths occurring in the human, chimpanzee...
Select this article
Letter: Mobile elements create structural variation: Analysis of a complete human genome
- Jinchuan Xing,
- Yuhua Zhang,
- Kyudong Han,
- Abdel Halim Salem,
- Shurjo K. Sen,
- Chad D. Huff,
- Qiong Zhou,
- Ewen F. Kirkness,
- Samuel Levy,
- Mark A. Batzer,
- and Lynn B. Jorde
Genome Res. September 2009 19: 1516-1526; Published in Advance May 13, 2009, doi:10.1101/gr.091827.109
...distribution of the 43 Alu insertion polymorphisms is skewed toward low insertion frequencies, in agreement with their absence in the HGP reference (Fig. 2). Mobile element-mediated insertions Among the 706 insertion events, 650 are HuRef-specific retrotransposon insertions, including 584 Alu, 52 L1, and 14...
Select this article
LETTER: Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
- Louie N. van de Lagemaat,
- Liane Gagnier,
- Patrik Medstrand,
- and Dixie L. Mager
Genome Res. September 2005 15: 1243-1249; doi:10.1101/gr.3910705
...., Xing, J., Barnes, E., and Batzer, M.A. 2004 . Differential Alu mobilization and polymorphism among the human and chimpanzee lineages. Genome Res. 14 : 1068 -1075. ↵ Helleday, T. 2003 . Pathways for mitotic homologous recombination in mammalian cells. Mutat. Res. 532 : 103 -115. ↵ Higgins, D...
Select this article
LETTER: AluInsertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa
- Mark Stoneking,
- Jennifer J. Fontius,
- Stephanie L. Clifford,
- Himla Soodyall,
- Santosh S. Arcot,
- Nilmani Saha,
- Trefor Jenkins,
- Mohammad A. Tahir,
- Prescott L. Deininger,
- and Mark A. Batzer
Genome Res. November 1, 1997 7: 1061-1071; doi:10.1101/gr.7.11.1061
...( Arcot et al. 1996 ), although a few Ya5 Alu family members have been found in chimpanzees (for review, see Deininger and Batzer 1995 ). In parallel, a second subfamily that is an independent derivative of the Y lineage of Alu sequences, termed Yb8, has also expanded to ∼500 copies within the human...
Select this article
Resource: Genetic features and genomic targets of human KRAB-zinc finger proteins
- Jonas de Tribolet-Hardy,
- Christian W. Thorball,
- Romain Forey,
- Evarist Planet,
- Julien Duc,
- Alexandre Coudray,
- Bara Khubieh,
- Sandra Offner,
- Cyril Pulver,
- Jacques Fellay,
- Michael Imbeault,
- Priscilla Turelli,
- and Didier Trono
Genome Res. August 2023 33: 1409-1423; Published in Advance September 20, 2023, doi:10.1101/gr.277722.123
...of tandem repeats (VNTR)-Alu (SVAs). ERVs and LINEs encode the reverse transcriptase and endonuclease activities necessary for their retrotransposition, whereas the nonautonomous SINE and SVA elements rely on LINE proteins for spreading. Due respectively to internal recombination and abortive...
OPEN ACCESS ARTICLE
Select this article
Method: The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology
- Eugene J. Gardner,
- Vincent K. Lam,
- Daniel N. Harris,
- Nelson T. Chuang,
- Emma C. Scott,
- W. Stephen Pittard,
- Ryan E. Mills,
- The 1000 Genomes Project Consortium,
- and Scott E. Devine
Genome Res. November 2017 27: 1916-1929; Published in Advance August 30, 2017, doi:10.1101/gr.218032.116
...(A) and 79 novel Alu subfamilies (B) that were identified using interior sequence changes were analyzed for sharing among the 1000 Genomes Project nonadmixed continental populations. Plotted are: (top) log10 total sites in each subfamily; (bottom) proportion of sites shared among all continental...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hedges et al. 14 (6): 1068.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: