Searching journal content for articles similar to Harris et al. 13 (3): 407.

Displaying results 1-10 of 501

For checked items

view abstracts
download to citation manager

Select this article
Method: Accurate reconstruction of bacterial pan- and core genomes with PEPPAN
- Zhemin Zhou,
- Jane Charlesworth,
- and Mark Achtman
Genome Res. November 2020 30: 1667-1679; Published in Advance October 14, 2020, doi:10.1101/gr.260828.120
...Accurate reconstruction of bacterial pan- and core s with PEPPAN Zhemin Zhou, Jane Charlesworth and Mark Achtman Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom Corresponding author: Zhemin.Zhou@warwick.ac.ukAbstractBacterial s can contain traces of a complex...
OPEN ACCESS ARTICLE
Select this article
Method: GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
- Zhemin Zhou,
- Nabil-Fareed Alikhan,
- Martin J. Sergeant,
- Nina Luhmann,
- Cátia Vaz,
- Alexandre P. Francisco,
- João André Carriço,
- and Mark Achtman
Genome Res. September 2018 28: 1395-1404; Published in Advance July 26, 2018, doi:10.1101/gr.232397.117
...Zhemin Zhou1, Nabil-Fareed Alikhan1, Martin J. Sergeant1, Nina Luhmann1, Cátia Vaz2,3, Alexandre P. Francisco2,4, João André Carriço5 and Mark Achtman1 1Warwick Medical School, University of Warwick, Coventry, CV4 7AL, United Kingdom; 2Instituto de Engenharia de Sistemas e Computadores...
OPEN ACCESS ARTICLE
Select this article
Resource: The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
- Zhemin Zhou,
- Nabil-Fareed Alikhan,
- Khaled Mohamed,
- Yulei Fan,
- the Agama Study Group,
- and Mark Achtman
Genome Res. January 2020 30: 138-152; Published in Advance December 6, 2019, doi:10.1101/gr.251678.119
...Zhemin Zhou1, Nabil-Fareed Alikhan1, Khaled Mohamed, Yulei Fan, the Agama Study Group2 and Mark Achtman Warwick Medical School, University of Warwick, Coventry CV4 7AL, United Kingdom; 3Scottish Salmonella Reference Laboratory, Glasgow G31 2ER, UK; 4Public Health England (PHE), Colindale, London NW...
OPEN ACCESS ARTICLE
Select this article
Resource: Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set
- Joana Damas,
- Rebecca O'Connor,
- Marta Farré,
- Vasileios Panagiotis E. Lenis,
- Henry J. Martell,
- Anjali Mandawala,
- Katie Fowler,
- Sunitha Joseph,
- Martin T. Swain,
- Darren K. Griffin,
- and Denis M. Larkin
Genome Res. May 2017 27: 875-884; Published in Advance November 30, 2016, doi:10.1101/gr.213660.116
...Oakland Research Institute and the zebra finch TGMCBa library (Clemson University Genomics Institute). Classification tree The classification tree was created in R (v.3.2.3) (R Core Team 2015) using the CART algorithm included in the rpart package (v.4.1-10) (https...
OPEN ACCESS ARTICLE
Select this article
Research: Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
- Kiana Mohajeri,
- Stuart Cantsilieris,
- John Huddleston,
- Bradley J. Nelson,
- Bradley P. Coe,
- Catarina D. Campbell,
- Carl Baker,
- Lana Harshman,
- Katherine M. Munson,
- Zev N. Kronenberg,
- Milinn Kremitzki,
- Archana Raja,
- Claudia Rita Catacchio,
- Tina A. Graves,
- Richard K. Wilson,
- Mario Ventura,
- and Evan E. Eichler
Genome Res. November 2016 26: 1453-1467; Published in Advance October 7, 2016, doi:10.1101/gr.211284.116
...Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region Kiana Mohajeri 1 , 5 , Stuart Cantsilieris 1 , 5 , John Huddleston 1 , 2 , Bradley J. Nelson 1 , Bradley P. Coe 1...
Select this article
Methods: Genome-wide nucleotide-level mammalian ancestor reconstruction
- Benedict Paten,
- Javier Herrero,
- Stephen Fitzgerald,
- Kathryn Beal,
- Paul Flicek,
- Ian Holmes,
- and Ewan Birney
Genome Res. November 2008 18: 1829-1843; Published in Advance October 10, 2008, doi:10.1101/gr.076521.108
...Genome-wide nucleotide-level mammalian ancestor reconstruction Benedict Paten 1 , 4 , Javier Herrero 2 , Stephen Fitzgerald 2 , Kathryn Beal 2 , Paul Flicek 2 , Ian Holmes 3 , and Ewan Birney 2 , 4 1...
OPEN ACCESS ARTICLE
Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
...Pan analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility Dongying Xie1,2,3, Pohao Ye1,3, Yiming Ma1 and Zhongying Zhao1 1Department of Biology, Hong Kong Baptist University, Hong Kong SAR, China; 2Institute for Research...
Select this article
Method: Robust 16S rRNA classification based on a compressed LCA index
- Omar Ahmed,
- Christina Boucher,
- and Ben Langmead
Genome Res. December 2025 35: 2650-2660; Published in Advance August 25, 2025, doi:10.1101/gr.279846.124
...Omar Ahmed1, Christina Boucher2 and Ben Langmead1 1Department of Computer Science, Whiting School of Engineering, Johns Hopkins University, Baltimore, Maryland 21218, USA; 2Department of Computer and Information Science and Engineering, Herbert Wertheim College of Engineering, University of Florida...
Select this article
Method: Tree-based differential testing using inferential uncertainty for RNA-seq
- Noor Pratap Singh,
- Euphy Y. Wu,
- Jason Fan,
- Michael I. Love,
- and Rob Patro
Genome Res. October 2025 35: 2326-2338; Published in Advance August 21, 2025, doi:10.1101/gr.279981.124
...Noor Pratap Singh1, Euphy Y. Wu2, Jason Fan1, Michael I. Love2,3 and Rob Patro1 1Department of Computer Science, University of Maryland, College Park, Maryland 20742, USA; 2Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA; 3Department...
OPEN ACCESS ARTICLE
Select this article
Method: Real-time analysis and visualization of nanopore metagenomic samples with MARTi
- Ned Peel,
- Samuel Martin,
- Darren Heavens,
- Douglas W. Yu,
- Matthew D. Clark,
- and Richard M. Leggett
Genome Res. November 2025 35: 2488-2500; Published in Advance October 27, 2025, doi:10.1101/gr.280550.125
...Ned Peel1, Samuel Martin1, Darren Heavens1, Douglas W. Yu2,3,4, Matthew D. Clark5 and Richard M. Leggett1,4 1Earlham Institute, Norwich, NR4 7UZ, United Kingdom; 2University of East Anglia, Norwich, NR4 7TJ, United Kingdom; 3Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Harris et al. 13 (3): 407.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: