Searching journal content for articles similar to Hao et al. 30 (11): 1570.

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  1. Research: Genome-wide mapping reveals R-loops associated with centromeric repeats in maize
    • Yang Liu,
    • Qian Liu,
    • Handong Su,
    • Kunpeng Liu,
    • Xue Xiao,
    • Wei Li,
    • Qianwen Sun,
    • James A. Birchler,
    • and Fangpu Han
    Genome Res. August 2021 31: 1409-1418; Published in Advance July 9, 2021, doi:10.1101/gr.275270.121
    ...with the ability to act in both cis and trans on chromatin to help maintain pericentromeric heterochromatin (Hao et al. 2020). In maize, retrotransposons were major components of pericentromeric heterochromatin, and we found that the majority of R-loops were derived from LTR/Gypsy and LTR/Copia families...
  2. Research: Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat
    • Jingwei Zhou,
    • Yuhong Huang,
    • Huan Ma,
    • Yiqian Chen,
    • Chuanye Chen,
    • Fangpu Han,
    • and Handong Su
    Genome Res. November 2025 35: 2461-2471; Published in Advance September 30, 2025, doi:10.1101/gr.280913.125
    ...and duplications near centromere breakpoints. We reveal that the damaged centromeres possess a remarkable capacity for self-regulation, through employing structural modifications such as expansion, contraction, and neocentromere formation to maintain their functional integrity. Centromere breakage triggers...
  3. Research: Plant polymerase IV sensitizes chromatin through histone modifications to preclude spread of silencing into protein-coding domains
    • Vivek Hari Sundar G,
    • Chenna Swetha,
    • Debjani Basu,
    • Kannan Pachamuthu,
    • Steffi Raju,
    • Tania Chakraborty,
    • Rebecca A. Mosher,
    • and P.V. Shivaprasad
    Genome Res. May 2023 33: 715-728; Published in Advance June 5, 2023, doi:10.1101/gr.277353.122
    ...activity resulted in small(s) RNA production, leading to post-transcriptional gene silencing. We show that such effects are significantly pronounced in rice, a plant with a larger with distributed heterochromatin compared with Arabidopsis. Our results indicate the division of labor among plant...
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  4. Research: Cell-type- and chromosome-specific chromatin landscapes and DNA replication programs of Drosophila testis tumor stem cell–like cells
    • Jennifer A. Urban,
    • Daniel Ringwalt,
    • John M. Urban,
    • Wingel Xue,
    • Ryan Gleason,
    • Keji Zhao,
    • and Xin Chen
    Genome Res. January 2026 36: 83-101; Published in Advance December 10, 2025, doi:10.1101/gr.280809.125
    ...the euchromatic chromosome arms but are depleted in the pericentromeric regions of Chromosomes 2, 3, and X (Fig. 3B; Supplemental Fig. S4A). In contrast, H3K9me3, which associates with constitutive heterochromatin, shows enrichment at pericentromeric regions (Fig. 3B; Supplemental Fig. S4A). Together...
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