Searching journal content for articles similar to Han et al. 30 (8): 1097.

Displaying results 1-8 of 8

For checked items

view abstracts
download to citation manager

Select this article
Resource: Haplotype-resolved 3D chromatin architecture of the hybrid pig
- Yu Lin,
- Jing Li,
- Yiren Gu,
- Long Jin,
- Jingyi Bai,
- Jiaman Zhang,
- Yujie Wang,
- Pengliang Liu,
- Keren Long,
- Mengnan He,
- Diyan Li,
- Can Liu,
- Ziyin Han,
- Yu Zhang,
- Xiaokai Li,
- Bo Zeng,
- Lu Lu,
- Fanli Kong,
- Ying Sun,
- Yongliang Fan,
- Xun Wang,
- Tao Wang,
- An'an Jiang,
- Jideng Ma,
- Linyuan Shen,
- Li Zhu,
- Yanzhi Jiang,
- Guoqing Tang,
- Xiaolan Fan,
- Qingyou Liu,
- Hua Li,
- Jinyong Wang,
- Li Chen,
- Liangpeng Ge,
- Xuewei Li,
- Qianzi Tang,
- and Mingzhou Li
Genome Res. February 2024 34: 310-325; Published in Advance March 13, 2024, doi:10.1101/gr.278101.123
...and Asian aboriginal Tibetan pigs. Using the F1 hybrid progeny, we then examine how allelic differences in 3D chromatin architecture broadly affect gene expression, and eventually phenotype, at multiple levels.ResultsConstruction of high-resolution diploid Hi-C contact mapsTo generate chromosome...
OPEN ACCESS ARTICLE
Select this article
Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
- Xin Li,
- San-Gang He,
- Wen-Rong Li,
- Ling-Yun Luo,
- Ze Yan,
- Dong-Xin Mo,
- Xing Wan,
- Feng-Hua Lv,
- Ji Yang,
- Ya-Xi Xu,
- Juan Deng,
- Qiang-Hui Zhu,
- Xing-Long Xie,
- Song-Song Xu,
- Chen-Xi Liu,
- Xin-Rong Peng,
- Bin Han,
- Zhong-Hui Li,
- Lei Chen,
- Jian-Lin Han,
- Xue-Zhi Ding,
- Renqing Dingkao,
- Yue-Feng Chu,
- Jin-Yan Wu,
- Li-Min Wang,
- Ping Zhou,
- Ming-Jun Liu,
- and Meng-Hua Li
Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
....2), they will be of great importance in exploring the genetic mechanisms underlying high-altitude genetic adaptation. Moreover, understanding the molecular basis of heterosis and phenotypic variation requires knowledge of diploid alleles (Sun et al. 2020). The high-resolution species-specific haploids of the F1-hybrid can...
OPEN ACCESS ARTICLE
Select this article
Method: RETrace: simultaneous retrospective lineage tracing and methylation profiling of single cells
- Christopher Jen-Yue Wei and
- Kun Zhang
Genome Res. April 2020 30: 602-610; Published in Advance March 3, 2020, doi:10.1101/gr.255851.119
...by running HipSTR on all single cells simultaneously using default values. HipSTR allelotypes were filtered to require a minimum 0.7 posterior probability of the genotype call. The resulting microsatellite allelotype consisted of a list of diploid microsatellite subunit counts for each single cell...
OPEN ACCESS ARTICLE
Select this article
Research: Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat
- Jingwei Zhou,
- Yuhong Huang,
- Huan Ma,
- Yiqian Chen,
- Chuanye Chen,
- Fangpu Han,
- and Handong Su
Genome Res. November 2025 35: 2461-2471; Published in Advance September 30, 2025, doi:10.1101/gr.280913.125
...Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China; 3State Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy...
Select this article
Review: The superpowers of imprinting control regions
- Bertille Montibus,
- Franck Court,
- and Philippe Arnaud
Genome Res. January 2026 36: 1-19; Published in Advance December 10, 2025, doi:10.1101/gr.281215.125
..., despite their diploid composition (Barton et al. 1985). This work demonstrated the existence of functional differences between the two parental s and, in fact, highlighted the necessity of both a maternal and a paternal for proper mammalian development. Genetic studies in mouse embryos with uniparental...
Select this article
Research: Ultra-long-range interactions between active regulatory elements
- Elias T. Friman,
- Ilya M. Flyamer,
- Davide Marenduzzo,
- Shelagh Boyle,
- and Wendy A. Bickmore
Genome Res. August 2023 33: 1269-1283; Published in Advance July 14, 2023, doi:10.1101/gr.277567.122
...are in proximity for cross-linking and ligation, strongly scales negatively with the genomic distance between two regions, meaning that, on average, regions interact less the more intervening chromatin is between them (Lieberman-Aiden et al. 2009).CREs controlling developmentally regulated genes are typically...
OPEN ACCESS ARTICLE
Select this article
Method: Copolymerization of single-cell nucleic acids into balls of acrylamide gel
- Siran Li,
- Jude Kendall,
- Sarah Park,
- Zihua Wang,
- Joan Alexander,
- Andrea Moffitt,
- Nissim Ranade,
- Cassidy Danyko,
- Bruno Gegenhuber,
- Stephan Fischer,
- Brian D. Robinson,
- Herbert Lepor,
- Jessica Tollkuhn,
- Jesse Gillis,
- Eric Brouzes,
- Alex Krasnitz,
- Dan Levy,
- and Michael Wigler
Genome Res. January 2020 30: 49-61; Published in Advance November 14, 2019, doi:10.1101/gr.253047.119
...profile; (E) a representative diploid tumor profile; and (F) a representative tetraploid tumor profile. (G) Hierarchical clustering of this region by combining data from both the BAG method and 96-well WGA method.The method works on nuclei isolated from frozen tumor biopsies, and we illustrate this using...
OPEN ACCESS ARTICLE
Select this article
Research: Two contrasting classes of nucleolus-associated domains in mouse fibroblast heterochromatin
- Anastassiia Vertii,
- Jianhong Ou,
- Jun Yu,
- Aimin Yan,
- Hervé Pagès,
- Haibo Liu,
- Lihua Julie Zhu,
- and Paul D. Kaufman
Genome Res. August 2019 29: 1235-1249; Published in Advance June 14, 2019, doi:10.1101/gr.247072.118
...% of the nonrepetitive mouse , respectively. For comparison, LADs comprise ∼40% of the mouse (Guelen et al. 2008; Peric-Hupkes et al. 2010), and NADs in human diploid IMR-90 fibroblasts cover 38% of the (Dillinger et al. 2017). Also, XL and nonXL murine NADs had similar median lengths (Fig. 2D), comparable to MEF (534...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Han et al. 30 (8): 1097.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: