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LETTER: Uneven chromosome contraction and expansion in the maize genome
- Rémy Bruggmann,
- Arvind K. Bharti,
- Heidrun Gundlach,
- Jinsheng Lai,
- Sarah Young,
- Ana C. Pontaroli,
- Fusheng Wei,
- Georg Haberer,
- Galina Fuks,
- Chunguang Du,
- Christina Raymond,
- Matt C. Estep,
- Renyi Liu,
- Jeffrey L. Bennetzen,
- Agnes P. Chan,
- Pablo D. Rabinowicz,
- John Quackenbush,
- W. Brad Barbazuk,
- Rod A. Wing,
- Bruce Birren,
- Chad Nusbaum,
- Steve Rounsley,
- Klaus F.X. Mayer,
- and Joachim Messing
Genome Res. October 2006 16: 1241-1251; Published in Advance August 10, 2006, doi:10.1101/gr.5338906
...for this study (Supplemental Fig. 1). Zm1S is located on the short arm of chromosome 1, spans the markers bnlg1124 at position 29.0 and bnlg1112 at position 46.4 of the BNL 2002 map, and is contained within a tiling path that contains 60 BAC clones (Supplemental Table A). Zm9L is located on the long arm...
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REPORT: Comparative Genome Mapping in the Sequence-based Era: Early Experience with Human Chromosome 7
- James W. Thomas,
- Tyrone J. Summers,
- Shih-Queen Lee-Lin,
- Valerie V. Braden Maduro,
- Jacquelyn R. Idol,
- Stephen D. Mastrian,
- Joseph F. Ryan,
- D. Curtis Jamison,
- and Eric D. Green
Genome Res. May 1, 2000 10: 624-633; doi:10.1101/gr.10.5.624
...rat BACs). The above strategy for constructing BAC contigs has been implemented for mapping mouse genomic regions homologous to human chromosome 7. To date, we have analyzed the sequence for greater than half of human chromosome 7 (∼100 Mb), resulting in the design of &gt;400 gene/EST-based overgo...
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Methods: Decoding the fine-scale structure of a breast cancer genome and transcriptome
- Stanislav Volik,
- Benjamin J. Raphael,
- Guiqing Huang,
- Michael R. Stratton,
- Graham Bignel,
- John Murnane,
- John H. Brebner,
- Krystyna Bajsarowicz,
- Pamela L. Paris,
- Quanzhou Tao,
- David Kowbel,
- Anna Lapuk,
- Dmitri A. Shagin,
- Irina A. Shagina,
- Joe W. Gray,
- Jan-Fang Cheng,
- Pieter J. de Jong,
- Pavel Pevzner,
- and Colin Collins
Genome Res. March 2006 16: 394-404; Published in Advance February 3, 2006, doi:10.1101/gr.4247306
...library with multiple hybridization probes spaced at ∼50 kb across amplicons at chromosomes 1, 3, 17, and 20, and end sequencing the isolated BAC clones. The combination of targeted and whole- ESP allowed the mapping of ∼600 BES on the 1.4 Mb of ZNF217 amplicon (approximately a BES every ∼2.2 kb...
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METHODS: Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome
- Alex Lim,
- Eileen T. Dimalanta,
- Konstantinos D. Potamousis,
- Galex Yen,
- Jennifer Apodoca,
- Chunhong Tao,
- Jieyi Lin,
- Rong Qi,
- John Skiadas,
- Arvind Ramanathan,
- Nicole T. Perna,
- Guy Plunkett III,
- Valerie Burland,
- Bob Mau,
- Jeremiah Hackett,
- Frederick R. Blattner,
- Thomas S. Anantharaman,
- Bhubaneswar Mishra,
- and David C. Schwartz
Genome Res. September 1, 2001 11: 1584-1593; Published in Advance August 16, 2001, doi:10.1101/gr.172101
....M. , et al. ( 1995 ) Whole- random sequencing and assembly of Haemophilus influenzae Rd. Science 269 : 496 – 512 . ↵ Han C.S. , Sutherland R.D. , Jewett P.B. , Campbell M.L. , Meincke L.J. , Tesmer J.G. , Mundt M.O. , Fawcett J.J. , Kim U. , Deaven L.L. , et al. ( 2000 ) Construction of a BAC contig map...

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