Searching journal content for articles similar to Hamilton et al. 16 (5): 584.

Displaying results 1-6 of 6

For checked items

view abstracts
download to citation manager

Select this article
Research: Transposable elements drive the evolution of metazoan zinc finger genes
- Jonathan N. Wells,
- Ni-Chen Chang,
- John McCormick,
- Caitlyn Coleman,
- Nathalie Ramos,
- Bozhou Jin,
- and Cédric Feschotte
Genome Res. August 2023 33: 1325-1339; Published in Advance September 15, 2023, doi:10.1101/gr.277966.123
...subfamily found in cyprinid fish, which is characterized by a conserved sequence we dubbed the fish N-terminal zinc finger–associated (FiNZ) domain. Zebrafish possess approximately 700 FiNZ-ZNFs, many of which are evolving adaptively under positive selection. Like mammalian KZNFs, most zebrafish Fi...
OPEN ACCESS ARTICLE
Select this article
Resource: Genetic features and genomic targets of human KRAB-zinc finger proteins
- Jonas de Tribolet-Hardy,
- Christian W. Thorball,
- Romain Forey,
- Evarist Planet,
- Julien Duc,
- Alexandre Coudray,
- Bara Khubieh,
- Sandra Offner,
- Cyril Pulver,
- Jacques Fellay,
- Michael Imbeault,
- Priscilla Turelli,
- and Didier Trono
Genome Res. August 2023 33: 1409-1423; Published in Advance September 20, 2023, doi:10.1101/gr.277722.123
...(above) are shown. The TE subfamilies are colored according to their families. Primary targets for each KZFP are highlighted in red. (B) Zinc fingerprints of ZFP69 and ZFP69B. The DNA-contacting amino acids for zinc finger (ZF) are shown; differences are highlighted in red. (C) DNA binding motifs of ZFP...
OPEN ACCESS ARTICLE
Select this article
Resource: GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes
- Yi Shao,
- Chunyan Chen,
- Hao Shen,
- Bin Z. He,
- Daqi Yu,
- Shuai Jiang,
- Shilei Zhao,
- Zhiqiang Gao,
- Zhenglin Zhu,
- Xi Chen,
- Yan Fu,
- Hua Chen,
- Ge Gao,
- Manyuan Long,
- and Yong E. Zhang
Genome Res. April 2019 29: 682-696; Published in Advance March 12, 2019, doi:10.1101/gr.238733.118
.... For brain development, primate-specific KRAB zinc-finger proteins (KZNFs) are specifically up-regulated in the mid-fetal stage, which may have contributed to the evolution of this critical stage. Altogether, hundreds of PSGs are either recruited to processes under strong selection pressure or to processes...
OPEN ACCESS ARTICLE
Select this article
RESOURCE: A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors
- Stuart Huntley,
- Daniel M. Baggott,
- Aaron T. Hamilton,
- Mary Tran-Gyamfi,
- Shan Yang,
- Joomyeong Kim,
- Laurie Gordon,
- Elbert Branscomb,
- and Lisa Stubbs
Genome Res. May 2006 16: 669-677; Published in Advance April 10, 2006, doi:10.1101/gr.4842106
.... , Baggott D.M. , Gordon L. , Stubbs L. , 2006 Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes. Genome Res. (this issue). ↵ Hoffmann A. , Ciani E. , Boeckardt J. , Holsboer F. , Journot L. , Spengler D. ( 2003 ) Transcriptional activities of the zinc finger...
Select this article
Research: Transposable elements and their KZFP controllers are drivers of transcriptional innovation in the developing human brain
- Christopher J. Playfoot,
- Julien Duc,
- Shaoline Sheppard,
- Sagane Dind,
- Alexandre Coudray,
- Evarist Planet,
- and Didier Trono
Genome Res. September 2021 31: 1531-1545; Published in Advance August 16, 2021, doi:10.1101/gr.275133.120
...) account for more than 50% of the human and many have been co-opted throughout evolution to provide regulatory functions for gene expression networks. Several lines of evidence suggest that these networks are fine-tuned by the largest family of TE controllers, the KRAB-containing zinc finger proteins...
OPEN ACCESS ARTICLE
Select this article
Research: Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs
- Michael Schnall-Levin,
- Olivia S. Rissland,
- Wendy K. Johnston,
- Norbert Perrimon,
- David P. Bartel,
- and Bonnie Berger
Genome Res. September 2011 21: 1395-1403; Published in Advance June 17, 2011, doi:10.1101/gr.121210.111
...and divergence in the ZNF91 subfamily of primate-specific zinc finger genes. Genome Res 16: 584– 594. Hanahan D, Weinberg RA. 2000. The hallmarks of cancer. Cell 100: 57–70. Hannenhalli S. 2008. Eukaryotic transcription factor binding sites–modeling and integrative search methods. Bioinformatics 24: 1325...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hamilton et al. 16 (5): 584.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: