Searching journal content for articles similar to Hall et al. 13 (2): 195.

Displaying results 1-10 of 16

For checked items

view abstracts
download to citation manager

Select this article
LETTER: Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16-kb GC-rich transcriptional “strand-switch” domain as a major feature
- Samson O. Obado,
- Martin C. Taylor,
- Shane R. Wilkinson,
- Elizabeth V. Bromley,
- and John M. Kelly
Genome Res. January 2005 15: 36-43; doi:10.1101/gr.2895105
...of functional RNAi excludes a role for this system and highlights a possible major difference in the mechanisms of centromere maintenance between trypanosome species. In higher eukaryotes, a role for sequence-specific binding in centromere function has been inferred from the adaptive evolution of the satellite...
Select this article
PERSPECTIVE: The Arabidopsis genome: A foundation for plant research
- Michael Bevan and
- Sean Walsh
Genome Res. December 2005 15: 1632-1642; doi:10.1101/gr.3723405
...). This review summarizes progress made in the past five years and speculates about future developments in Arabidopsis research and its implications for crop science. The provision of large populations of gene disruption lines to the research community has greatly accelerated the impact of genomics on many...
Select this article
LETTER: Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses
- David A. Wright and
- Daniel F. Voytas
Genome Res. January 1, 2002 12: 122-131; Published in Advance December 14, 2001, doi:10.1101/gr.196001
...retroelements of Arabidopsis thaliana encode a putative envelope gene, suggesting that they are infectious retroviruses. Because most insertions are highly degenerate, we undertook a comprehensive analysis of the A. thaliana genome sequence to discern their conserved features. One family ( Athila4...
Select this article
Review: The structure, function, and evolution of plant centromeres
- Matthew Naish and
- Ian R. Henderson
Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
...evolution. For example, in A. thaliana, haplotype linkage blocks have been maintained across similar CEN178 arrays, despite internal satellite dynamics, where array expansion and shrinkage has occurred since populations diverged (Wlodzimierz et al. 2023b). This is similar to maintenance of large centromere...
OPEN ACCESS ARTICLE
Select this article
LETTER: Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
- Ryan D. Morin,
- Gozde Aksay,
- Elena Dolgosheina,
- H. Alexander Ebhardt,
- Vincent Magrini,
- Elaine R. Mardis,
- S. Cenk Sahinalp,
- and Peter J. Unrau
Genome Res. April 2008 18: 571-584; Published in Advance March 6, 2008, doi:10.1101/gr.6897308
...an important role in transcriptional and post-transcriptional gene regulation ( Bartel 2004 ) that include viral defense ( Wang and Metzlaff 2005 ), silencing of transposable elements, and general heterochromatin maintenance ( Herr 2005 ). The small RNAs produced by angiosperms such as Arabidopsis thaliana can...
Select this article
LETTER: Dynamic evolution at pericentromeres
- Anne E. Hall,
- Gregory C. Kettler,
- and Daphne Preuss
Genome Res. March 2006 16: 355-364; Published in Advance February 6, 2006, doi:10.1101/gr.4399206
...: Maintenance of conserved and variable domains. Genome Res. 13 : 195 –205. ↵ Hall, S.E., Luo, S., Hall, A.E., and Preuss, D. 2005 . Differential rates of local and global homogenization in centromere satellites from Arabidopsis relatives. Genetics 170 : 1913 –1927. ↵ Henikoff, S., Ahmad, K., and Malik, H...
Select this article
Research: Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus
- Rita Tam,
- Mareike Möller,
- Runpeng Luo,
- Zhenyan Luo,
- Ashley Jones,
- Sambasivam Periyannan,
- John P. Rathjen,
- and Benjamin Schwessinger
Genome Res. June 2025 35: 1364-1376; Published in Advance April 11, 2025, doi:10.1101/gr.280359.124
..., and -17) (Fig. 2D). Given the high TE density, such a diverse range in centromeric sequence conservation prompted us to examine their TE composition in search of elements possibly linked to centromere function.We conducted permutation tests to determine the enrichment of abundant TE superfamilies within...
OPEN ACCESS ARTICLE
Select this article
Research: Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events
- Marin Volarić,
- Evelin Despot-Slade,
- Damira Veseljak,
- Brankica Mravinac,
- and Nevenka Meštrović
Genome Res. November 2024 34: 1878-1894; Published in Advance October 22, 2024, doi:10.1101/gr.279225.124
...-rich euchromatin. SatDNAs in (peri)centromeric heterochromatin have a long history of investigation, including many plant and animal species, and studies have suggested a role of satDNA in chromatin packaging, centromere formation/maintenance, and centromere evolution (Blattes et al. 2006; Melters et al. 2013...
OPEN ACCESS ARTICLE
Select this article
Research: Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome
- Harsh G. Shukla,
- Mahul Chakraborty,
- and J.J. Emerson
Genome Res. September 2025 35: 2023-2040; Published in Advance July 16, 2025, doi:10.1101/gr.280728.125
...; red boxes occurring in pericentromeric regions of Chromosomes 2 and 3). The median read length (15–20 kb) of HiFi sequences is not sufficient to span many satellites and other repetitive sequences (Porubsky et al. 2023) enriched in the pericentromeric and centromeric heterochromatin (Jagannathan et al...
OPEN ACCESS ARTICLE
Select this article
Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...vary depending on the cell type, cell cycle stage, or environmental stressors and can be missed depending on the experimental setup. It is impossible to account for all these variables in a single experiment.View larger version: In this window In a new window Figure 1. Matrix of biological relevance...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Hall et al. 13 (2): 195.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: