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  1. Research: Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
    • Federico Comoglio,
    • Hyun Jung Park,
    • Stefan Schoenfelder,
    • Iros Barozzi,
    • Daniel Bode,
    • Peter Fraser,
    • and Anthony R. Green
    Genome Res. March 2018 28: 295-309; Published in Advance February 2, 2018, doi:10.1101/gr.227272.117
    ...in the nuclear space in a cohesin-dependent manner (Ing-Simmons et al. 2015), but how enhancer–enhancer interactions are modulated by extracellular signaling remains largely unknown.To investigate this aspect, we took advantage of the extensive and spatially compartmentalized epi remodeling induced by transient...
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  2. Research: Hormone-control regions mediate steroid receptor–dependent genome organization
    • François Le Dily,
    • Enrique Vidal,
    • Yasmina Cuartero,
    • Javier Quilez,
    • A. Silvina Nacht,
    • Guillermo P. Vicent,
    • José Carbonell-Caballero,
    • Priyanka Sharma,
    • José Luis Villanueva-Cañas,
    • Roberto Ferrari,
    • Lara Isabel De Llobet,
    • Gaetano Verde,
    • Roni H.G. Wright,
    • and Miguel Beato
    Genome Res. January 2019 29: 29-39; Published in Advance December 14, 2018, doi:10.1101/gr.243824.118
    .... 2011; Kuznetsova et al. 2015). Other transcription factors, for example, STAT transcription factors, have also been proposed to play a direct functional role in organizing the of T cells by leading to the spatial clustering of regulatory regions in specific hubs (Hakim et al. 2013) or to participate...
  3. Perspective: Understanding the regulatory and transcriptional complexity of the genome through structure
    • Tim R. Mercer and
    • John S. Mattick
    Genome Res. July 2013 23: 1081-1088; doi:10.1101/gr.156612.113
    ...GL. 2011. Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements. Genome Res 21: 697–706. Hakim O, Sung MH, Nakayamada S, Voss TC, Baek S, Hager GL. 2013. Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional...
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