Searching journal content for articles similar to Hahn et al. 15 (8): 1153.

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  1. Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
    • Xinghua Li,
    • Judith E. Mank,
    • and Liping Ban
    Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
    ...conservation of the X Chromosome gene content across broad swathes of the insect phylogeny, as well as temporal dynamics to the rate of X Chromosome evolution (Meisel et al. 2019; Chauhan et al. 2021).ResultsGenome featuresWe used PacBio HiFi sequencing to generate sequences for a female (XX) migratory locust...
  2. Research: Tempo and mode of regulatory evolution in Drosophila
    • Joseph D. Coolon,
    • C. Joel McManus,
    • Kraig R. Stevenson,
    • Brenton R. Graveley,
    • and Patricia J. Wittkopp
    Genome Res. May 2014 24: 797-808; Published in Advance February 24, 2014, doi:10.1101/gr.163014.113
    ...from positive selection in this lineage. Taken together, this work reveals not only the rate at which gene expression evolves, but also the molecular and evolutionary mechanisms responsible for this evolution.Understanding the relationship between tempo (the rate at which a trait evolves) and mode (the...
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  3. Review: De novo gene birth and the conundrum of ORFan genes in bacteria
    • Md. Hassan uz-Zaman and
    • Howard Ochman
    Genome Res. August 2025 35: 1679-1688; Published in Advance July 10, 2025, doi:10.1101/gr.280157.124
    ...) were derived from the frameshifting of other genes in the same (Vakirlis and Kupczok 2024). Although these genes represent unambiguous examples of de novo emergence from a previously noncoding sequence, their estimates suggest that this mode of de novo gene birth is a minor contributor to the pool...
  4. Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
    • Satyam P. Srivastav,
    • Cédric Feschotte,
    • and Andrew G. Clark
    Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
    ...in Drosophila melanogaster, much less is known about the origin and evolution of piCs in this or any other species. To investigate piC origin and evolution, we use a population genomic approach to compare piC activity and sequence composition across eight geographically distant strains of D. melanogaster...
  5. Research: The mode of expression divergence in Drosophila fat body is infection-specific
    • Bryan A. Ramirez-Corona,
    • Stephanie Fruth,
    • Oluchi Ofoegbu,
    • and Zeba Wunderlich
    Genome Res. June 2021 31: 1024-1034; Published in Advance April 15, 2021, doi:10.1101/gr.269597.120
    ...regions of genes, we found that genes with cis effects show evidence of more TFBS divergence than do genes with trans effects. Overall, we find that the mode of evolution in expression divergence can vary between conditions in a single tissue and likely represents condition-specific selection pressures...
  6. Research: Rapid evolution and strain turnover in the infant gut microbiome
    • Daisy W. Chen and
    • Nandita R. Garud
    Genome Res. June 2022 32: 1124-1136; Published in Advance May 11, 2022, doi:10.1101/gr.276306.121
    ...cannot. Given the functional importance of genetic variation in the microbiome, it is necessary that we characterize the typical evolutionary dynamics that occur over the course of infant development.There is reason to believe that the targets of selection as well as the tempo and mode of evolution...
  7. Research: The genomic basis of evolutionary differentiation among honey bees
    • Bertrand Fouks,
    • Philipp Brand,
    • Hung N. Nguyen,
    • Jacob Herman,
    • Francisco Camara,
    • Daniel Ence,
    • Darren E. Hagen,
    • Katharina J. Hoff,
    • Stefanie Nachweide,
    • Lars Romoth,
    • Kimberly K.O. Walden,
    • Roderic Guigo,
    • Mario Stanke,
    • Giuseppe Narzisi,
    • Mark Yandell,
    • Hugh M. Robertson,
    • Nikolaus Koeniger,
    • Panuwan Chantawannakul,
    • Michael C. Schatz,
    • Kim C. Worley,
    • Gene E. Robinson,
    • Christine G. Elsik,
    • and Olav Rueppell
    Genome Res. July 2021 31: 1203-1215; Published in Advance May 4, 2021, doi:10.1101/gr.272310.120
    ...et al. 2021).The evolution of complex insect societies represents one of the major evolutionary transitions (Maynard Smith and Szathmáry 1995). Genomic signatures of this transition share few commonalities across taxa, except for an increase in gene regulatory capacity (Gadau et al. 2012; Simola et...
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  8. Research: Evolution of genome structure in the Drosophila simulans species complex
    • Mahul Chakraborty,
    • Ching-Ho Chang,
    • Danielle E. Khost,
    • Jeffrey Vedanayagam,
    • Jeffrey R. Adrion,
    • Yi Liao,
    • Kristi L. Montooth,
    • Colin D. Meiklejohn,
    • Amanda M. Larracuente,
    • and J.J. Emerson
    Genome Res. March 2021 31: 380-396; Published in Advance February 9, 2021, doi:10.1101/gr.263442.120
    ..., underlies phenotypic evolution and contributes to hybrid incompatibilities between species. However, repetitive genomic regions are fragmented and misassembled in most contemporary assemblies. We generated highly contiguous de novo reference s for the Drosophila simulans species complex (D. simulans, D...
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  9. LETTER: The mode and tempo of genome size evolution in eukaryotes
    • Matthew J. Oliver,
    • Dmitri Petrov,
    • David Ackerly,
    • Paul Falkowski,
    • and Oscar M. Schofield
    Genome Res. May 2007 17: 594-601; Published in Advance April 9, 2007, doi:10.1101/gr.6096207
    ...The mode and tempo of genome size evolution in eukaryotes Matthew J. Oliver 1 , 5 , Dmitri Petrov 2 , David Ackerly 3 , Paul Falkowski 1 , 4 , and Oscar M. Schofield 1 1 Institute of Marine and Coastal Sciences, Rutgers...
  10. Resource: A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
    • Jing Liu,
    • Zongji Wang,
    • Jing Li,
    • Luohao Xu,
    • Jiaqi Liu,
    • Shaohong Feng,
    • Chunxue Guo,
    • Shengchan Chen,
    • Zhanjun Ren,
    • Jinpeng Rao,
    • Kai Wei,
    • Yuezhou Chen,
    • Erich D. Jarvis,
    • Guojie Zhang,
    • and Qi Zhou
    Genome Res. March 2021 31: 497-511; Published in Advance January 6, 2021, doi:10.1101/gr.271569.120
    ...or vertebrate karyotype because of their much slower rate of evolution. Here, we generated a new chromosome-level assembly of a female emu, and estimated the tempo of chromosome evolution across major avian phylogenetic branches, by comparing it to chromosome-level assemblies of 11 other bird and one turtle...
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