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METHODS: Arrays of Arrays for High-Throughput Gene Expression Profiling
- Patrick P. Zarrinkar,
- James K. Mainquist,
- Matthew Zamora,
- David Stern,
- John B. Welsh,
- Lisa M. Sapinoso,
- Garret M. Hampton,
- and David J. Lockhart
Genome Res. July 1, 2001 11: 1256-1261; Published in Advance June 12, 2001, doi:10.1101/gr.174801
...for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays. Genome Res. 8 : 1245 – 1258 . ↵ Hill A.A. , Hunter C.P. , Tsung B.T. , Tucker-Kellogg G. , Brown E.L. ( 2000 ) Genomic analysis of gene expression in C. elegans. Science 290 : 809 – 812 . ↵ Hughes T.R. , Marton M...
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METHODS: High-Throughput Variation Detection and Genotyping Using Microarrays
- David J. Cutler,
- Michael E. Zwick,
- Minerva M. Carrasquillo,
- Christopher T. Yohn,
- Katherine P. Tobin,
- Carl Kashuk,
- Debra J. Mathews,
- Nila A. Shah,
- Evan E. Eichler,
- Janet A. Warrington,
- and Aravinda Chakravarti
Genome Res. November 1, 2001 11: 1913-1925; Published in Advance October 15, 2001, doi:10.1101/gr.197201
...A daptive Ba ckground genotype C alling S cheme, see below) and will show that, in general, greater than 99.9999% accuracy can be achieved on &gt;80% of the genotype calls on a VDA. RESULTS High-density VDAs were fabricated using standard photolithography and solid-phase DNA synthesis by Affymetrix, Inc...
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LETTER: The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection
- Anirban Maitra,
- Yoram Cohen,
- Susannah E.D. Gillespie,
- Elizabeth Mambo,
- Noriyoshi Fukushima,
- Mohammad O. Hoque,
- Nila Shah,
- Michael Goggins,
- Joseph Califano,
- David Sidransky,
- and Aravinda Chakravarti
Genome Res. May 2004 14: 812-819; doi:10.1101/gr.2228504
...oligonucleotide microarrays. Nat. Genet. 21 : 42 -47. ↵ Hacia, J.G., Sun, B., Hunt, N., Edgemon, K., Mosbrook, D., Robbins, C., Fodor, S.P., Tagle, D.A., and Collins, F.S. 1998 . Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays. Genome Res. 8 : 1245...
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METHODS: A System for Specific, High-throughput Genotyping by Allele-specific Primer Extension on Microarrays
- Tomi Pastinen,
- Mirja Raitio,
- Katarina Lindroos,
- Päivi Tainola,
- Leena Peltonen,
- and Ann-Christine Syvänen
Genome Res. July 1, 2000 10: 1031-1042; doi:10.1101/gr.10.7.1031
...method was evaluated in more than 400 assays, using the arrays for screening 31 disease mutations and arrays for a panel of SNPs in the factor V and HLA-H genes. Samples from known disease carriers (90 carriers, 74 samples), along with the available homozygote patient samples (n = 10) and anonymous...
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METHODS: High-Throughput Genotyping with Single Nucleotide Polymorphisms
- Koustubh Ranade,
- Mau-Song Chang,
- Chih-Tai Ting,
- Dee Pei,
- Chin-Fu Hsiao,
- Michael Olivier,
- Robert Pesich,
- Joan Hebert,
- Yii-Der I. Chen,
- Victor J. Dzau,
- David Curb,
- Richard Olshen,
- Neil Risch,
- David R. Cox,
- and David Botstein
Genome Res. July 1, 2001 11: 1262-1268; Published in Advance June 12, 2001, doi:10.1101/gr.157801
....A. , Collins F.S. ( 1998 ) Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays. Genome Res. 8 : 1245 – 1258 . ↵ Halushka M.K. , Fan J.B. , Bentley K. , Hsie L. , Shen N. , Weder A. , Cooper R. , Lipshutz R. , Chakravarti A. ( 1999 ) Patterns of single...
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METHODS: Evaluation of Single Nucleotide Polymorphism Typing with Invader on PCR Amplicons and Its Automation
- Charles A. Mein,
- Bryan J. Barratt,
- Michael G. Dunn,
- Thorsten Siegmund,
- Annabel N. Smith,
- Laura Esposito,
- Sarah Nutland,
- Helen E. Stevens,
- Amanda J. Wilson,
- Michael S. Phillips,
- Nancy Jarvis,
- Scott Law,
- Monika de Arruda,
- and John A. Todd
Genome Res. March 1, 2000 10: 330-343; doi:10.1101/gr.10.3.330
...and childhood. Nat. Genet. 19: 98–100. Hacia, J.G, B. Sun, N. Hunt, K. Edgemon, D. Mosbrook, C. Robbins, S.P. Fodor, D.A. Tagle, and F.S. Collins. 1998. Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays. Genome Res. 8: 1245–1258. Hager, J., L. Hansen, C...
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METHODS: Y-Chromosomal SNPs in Finno–Ugric-Speaking Populations Analyzed by Minisequencing on Microarrays
- Mirja Raitio,
- Katarina Lindroos,
- Minna Laukkanen,
- Tomi Pastinen,
- Pertti Sistonen,
- Antti Sajantila,
- and Ann-Christine Syvänen
Genome Res. March 1, 2001 11: 471-482; doi:10.1101/gr.156301
...and mutational analysis using oligonucleotide microarrays. Nat. Genet. 21 : 42 – 47 . ↵ Hacia J.G. , Sun B. , Hunt N. , Edgemon K. , Mosbrook D. , Robbins C. , Fodor S.P.A. , Tagle D. , Collins F.S. ( 1998 ) Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide...

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