Searching journal content for articles similar to Guo et al. 29 (2): 261.

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  1. Resource: Structural variants in 3000 rice genomes
    • Roven Rommel Fuentes,
    • Dmytro Chebotarov,
    • Jorge Duitama,
    • Sean Smith,
    • Juan Fernando De la Hoz,
    • Marghoob Mohiyuddin,
    • Rod A. Wing,
    • Kenneth L. McNally,
    • Tatiana Tatarinova,
    • Andrey Grigoriev,
    • Ramil Mauleon,
    • and Nickolai Alexandrov
    Genome Res. May 2019 29: 870-880; Published in Advance April 16, 2019, doi:10.1101/gr.241240.118
    ...in finding causative variants in -wide association analysis. These new insights into rice biology are valuable for understanding the effects SVs have on gene function, with the prospect of identifying novel agronomically important alleles that can be utilized to improve cultivated rice.Genomics accelerates...
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  2. Research: Limited allele-specific gene expression in highly polyploid sugarcane
    • Gabriel Rodrigues Alves Margarido,
    • Fernando Henrique Correr,
    • Agnelo Furtado,
    • Frederik C. Botha,
    • and Robert James Henry
    Genome Res. February 2022 32: 297-308; Published in Advance December 23, 2021, doi:10.1101/gr.275904.121
    ...Innovation, University of Queensland, Brisbane 4072, Australia Corresponding authors: gramarga@usp.br, robert.henry@uq.edu.auAbstractPolyploidy is widespread in plants, allowing the different copies of genes to be expressed differently in a tissue-specific or developmentally specific way. This allele...
  3. Research: Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
    • Kevin Vanneste,
    • Guy Baele,
    • Steven Maere,
    • and Yves Van de Peer
    Genome Res. August 2014 24: 1334-1347; Published in Advance May 16, 2014, doi:10.1101/gr.168997.113
    ..., were accompanied by a ploidy increase (Wood et al. 2009). Most recent insights explaining the evolutionary success of polyploids have focused on their duplicated , which simultaneously provides thousands of novel genes for evolution to tinker with. Even though the large majority of these duplicated...
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  4. Research: Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes
    • Konstantinos Kritsas,
    • Samuel E. Wuest,
    • Daniel Hupalo,
    • Andrew D. Kern,
    • Thomas Wicker,
    • and Ueli Grossniklaus
    Genome Res. December 2012 22: 2455-2466; Published in Advance September 17, 2012, doi:10.1101/gr.129346.111
    ...have been proposed to play important roles in gene regulation, RNA processing, and maintaining genome integrity. However, because all of these functions can tolerate some sequence variation, their ultraconserved and ultraselected nature is not explained. We investigated whether there are highly...
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  5. Research: Adaptive selection of an incretin gene in Eurasian populations
    • Chia Lin Chang,
    • James J. Cai,
    • Chiening Lo,
    • Jorge Amigo,
    • Jae-Il Park,
    • and Sheau Yu Teddy Hsu
    Genome Res. January 2011 21: 21-32; Published in Advance October 26, 2010, doi:10.1101/gr.110593.110
    ...normal human serum, pooled complement-preserved human serum, and serum from individuals were obtained from Innovative Research and ProteoGenex. Stocks of different hormones were prepared in phosphate-buffered saline Adaptive evolution of human GIP gene Genome Research 29 www..org and diluted in a serum...
  6. Research: Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat
    • Jingwei Zhou,
    • Yuhong Huang,
    • Huan Ma,
    • Yiqian Chen,
    • Chuanye Chen,
    • Fangpu Han,
    • and Handong Su
    Genome Res. November 2025 35: 2461-2471; Published in Advance September 30, 2025, doi:10.1101/gr.280913.125
    ...for Chinese Spring wheat and both short-arm (S) and long-arm (L) telosomes of ditelosomic lines. The bottom track presents annotated gene distributions. Triangles in the CS tracks denote primer positions used for PCR validation of genomic regions near breakpoints. (D) Agarose gel electrophoresis results...
  7. PERSPECTIVE: Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
    • Michael Freeling and
    • Brian C. Thomas
    Genome Res. July 2006 16: 805-814; doi:10.1101/gr.3681406
    ...base that makes specific predictions as to gene content changes following different types of gene duplication. Genomic data from both chordate and angiosperm genomes fit these predictions: Each type of duplication provides a one-way injection of a biased set of genes into the gene pool. Tetraploidies...
  8. Research: Long-read genomics reveal extensive nuclear-specific evolution and allele-specific expression in a dikaryotic fungus
    • Rita Tam,
    • Mareike Möller,
    • Runpeng Luo,
    • Zhenyan Luo,
    • Ashley Jones,
    • Sambasivam Periyannan,
    • John P. Rathjen,
    • and Benjamin Schwessinger
    Genome Res. June 2025 35: 1364-1376; Published in Advance April 11, 2025, doi:10.1101/gr.280359.124
    ...to the infection of cereals (Sperschneider et al. 2023a; Henningsen et al. 2024), and sexual recombination in permissive hosts (Rodriguez-Algaba et al. 2022; Wang et al. 2022; Du et al. 2023). Such genetic reshuffling produces novel allele combinations of so-called avirulence (Avr) genes that encode secreted...
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  9. LETTER: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    • Takeshi Itoh,
    • Tsuyoshi Tanaka,
    • Roberto A. Barrero,
    • Chisato Yamasaki,
    • Yasuyuki Fujii,
    • Phillip B. Hilton,
    • Baltazar A. Antonio,
    • Hideo Aono,
    • Rolf Apweiler,
    • Richard Bruskiewich,
    • Thomas Bureau,
    • Frances Burr,
    • Antonio Costa de Oliveira,
    • Galina Fuks,
    • Takuya Habara,
    • Georg Haberer,
    • Bin Han,
    • Erimi Harada,
    • Aiko T. Hiraki,
    • Hirohiko Hirochika,
    • Douglas Hoen,
    • Hiroki Hokari,
    • Satomi Hosokawa,
    • Yue Hsing,
    • Hiroshi Ikawa,
    • Kazuho Ikeo,
    • Tadashi Imanishi,
    • Yukiyo Ito,
    • Pankaj Jaiswal,
    • Masako Kanno,
    • Yoshihiro Kawahara,
    • Toshiyuki Kawamura,
    • Hiroaki Kawashima,
    • Jitendra P. Khurana,
    • Shoshi Kikuchi,
    • Setsuko Komatsu,
    • Kanako O. Koyanagi,
    • Hiromi Kubooka,
    • Damien Lieberherr,
    • Yao-Cheng Lin,
    • David Lonsdale,
    • Takashi Matsumoto,
    • Akihiro Matsuya,
    • W. Richard McCombie,
    • Joachim Messing,
    • Akio Miyao,
    • Nicola Mulder,
    • Yoshiaki Nagamura,
    • Jongmin Nam,
    • Nobukazu Namiki,
    • Hisataka Numa,
    • Shin Nurimoto,
    • Claire O’Donovan,
    • Hajime Ohyanagi,
    • Toshihisa Okido,
    • Satoshi OOta,
    • Naoki Osato,
    • Lance E. Palmer,
    • Francis Quetier,
    • Saurabh Raghuvanshi,
    • Naomi Saichi,
    • Hiroaki Sakai,
    • Yasumichi Sakai,
    • Katsumi Sakata,
    • Tetsuya Sakurai,
    • Fumihiko Sato,
    • Yoshiharu Sato,
    • Heiko Schoof,
    • Motoaki Seki,
    • Michie Shibata,
    • Yuji Shimizu,
    • Kazuo Shinozaki,
    • Yuji Shinso,
    • Nagendra K. Singh,
    • Brian Smith-White,
    • Jun-ichi Takeda,
    • Motohiko Tanino,
    • Tatiana Tatusova,
    • Supat Thongjuea,
    • Fusano Todokoro,
    • Mika Tsugane,
    • Akhilesh K. Tyagi,
    • Apichart Vanavichit,
    • Aihui Wang,
    • Rod A. Wing,
    • Kaori Yamaguchi,
    • Mayu Yamamoto,
    • Naoyuki Yamamoto,
    • Yeisoo Yu,
    • Hao Zhang,
    • Qiang Zhao,
    • Kenichi Higo,
    • Benjamin Burr,
    • Takashi Gojobori,
    • Takuji Sasaki,
    • and for the Rice Annotation Project
    Genome Res. February 2007 17: 175-183; Published in Advance January 8, 2007, doi:10.1101/gr.5509507
    ...that duplication was suppressed or favored in a manner that depended on the function of a gene. Footnotes ↵ 2 Corresponding author: Takashi Gojobori. ↵ 2 E-mail tgojobor@genes.nig.ac.jp ; fax 81-55-981-6848. [Supplemental material is available online at www.genome...
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  10. Research: Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans
    • Maria Zhivagui,
    • Alvin W.T. Ng,
    • Maude Ardin,
    • Mona I. Churchwell,
    • Manuraj Pandey,
    • Claire Renard,
    • Stephanie Villar,
    • Vincent Cahais,
    • Alexis Robitaille,
    • Liacine Bouaoun,
    • Adriana Heguy,
    • Kathryn Z. Guyton,
    • Martha R. Stampfer,
    • James McKay,
    • Monica Hollstein,
    • Magali Olivier,
    • Steven G. Rozen,
    • Frederick A. Beland,
    • Michael Korenjak,
    • and Jiri Zavadil
    Genome Res. April 2019 29: 521-531; Published in Advance March 7, 2019, doi:10.1101/gr.242453.118
    ...(GA) (Segerbäck et al. 1995; Sumner et al. 1999; Ghanayem et al. 2005). The Hras mutation loads in neoplasms of mice exposed to ACR or GA were higher upon exposure to GA (Von Tungeln et al. 2012), and more mutations in the cII reporter gene of Big Blue mouse embryonic fibroblasts were obtained by GA...
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