Searching journal content for articles similar to Gunderson et al. 8 (11): 1142.

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  1. Methods: Decoding Randomly Ordered DNA Arrays
    • Kevin L. Gunderson,
    • Semyon Kruglyak,
    • Michael S. Graige,
    • Francisco Garcia,
    • Bahram G. Kermani,
    • Chanfeng Zhao,
    • Diping Che,
    • Todd Dickinson,
    • Eliza Wickham,
    • Jim Bierle,
    • Dennis Doucet,
    • Monika Milewski,
    • Robert Yang,
    • Chris Siegmund,
    • Juergen Haas,
    • Lixin Zhou,
    • Arnold Oliphant,
    • Jian-Bing Fan,
    • Steven Barnard,
    • and Mark S. Chee
    Genome Res. May 2004 14: 870-877; Published in Advance April 12, 2004, doi:10.1101/gr.2255804
    ...detection by ligation to complete n -mer DNA arrays. Genome Res. 8 : 1142 -1153. ↵ Hamming, R.W. 1986 . Coding and information theory . Prentice-Hall, Inc., Englewood Cliffs, NJ. ↵ Han, M., Gao, X., Su, J.Z., and Nie, S. 2001 . Quantum-dot-tagged microbeads for multiplexed optical coding of biomolecules...
  2. ARTICLE: Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays
    • Rui Mei,
    • Patricia C. Galipeau,
    • Cynthia Prass,
    • Anthony Berno,
    • Ghassan Ghandour,
    • Nila Patil,
    • Roger K. Wolff,
    • Mark S. Chee,
    • Brian J. Reid,
    • and David J. Lockhart
    Genome Res. August 1, 2000 10: 1126-1137; doi:10.1101/gr.10.8.1126
    ...Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays Rui Mei 1 , 7 , Patricia C. Galipeau 2 , Cynthia Prass 3 , Anthony Berno 1 , Ghassan Ghandour 4 , Nila Patil 1 , Roger K. Wolff 3...
  3. ARTICLE: A code for transcription initiation in mammalian genomes
    • Martin C. Frith,
    • Eivind Valen,
    • Anders Krogh,
    • Yoshihide Hayashizaki,
    • Piero Carninci,
    • and Albin Sandelin
    Genome Res. January 2008 18: 1-12; Published in Advance November 21, 2007, doi:10.1101/gr.6831208
    ...-length cDNAs. In oligo-capping, an oligonucleotide is ligated to full-length, 5′-phosphorylated mRNAs ( Suzuki et al. 2001 ) with T4 RNA ligase. This enzyme has nucleotide preferences, so that some RNA sequences are ligated 10-fold more efficiently than others ( Ohtsuka et al. 1980 ; Harada and Orgel 1993...
  4. REVIEW: Automation for Genomics, Part Two: Sequencers, Microarrays, and Future Trends
    • Deirdre Meldrum
    Genome Res. September 1, 2000 10: 1288-1303; doi:10.1101/gr.157400
    ...://www.apbiotech.com/MegaBACE ), is a 96-capillary array fluorescence-based DNA sequencer with interchangeable filter sets, confocal detection, and NT workstation. It automates gel matrix replacement, sample injection, DNA separation, and data analysis; uses a linear polyacrylamide separation matrix; and has a turnaround time of 2 hr per...
  5. METHODS: A System for Specific, High-throughput Genotyping by Allele-specific Primer Extension on Microarrays
    • Tomi Pastinen,
    • Mirja Raitio,
    • Katarina Lindroos,
    • Päivi Tainola,
    • Leena Peltonen,
    • and Ann-Christine Syvänen
    Genome Res. July 1, 2000 10: 1031-1042; doi:10.1101/gr.10.7.1031
    ...( Nikiforov et al. 1994 ). For the 10% of mutations that had detection primers forming hairpin loops, the primers were redesigned to detect the opposite DNA strand, thus solving the problem. By initially designing arrays that interrogate both DNA strands would obviate the need to reverse the orientation...
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