Searching journal content for articles similar to Groza et al. 35 (4): 644.

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  1. Erratum: Erratum: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
    • Cristian Groza,
    • Bing Ge,
    • Warren A. Cheung,
    • Tomi Pastinen,
    • and Guillaume Bourque
    Genome Res. March 2026 36: 660; doi:10.1101/gr.281963.126
    OPEN ACCESS ARTICLE
  2. Perspective: Unraveling the hidden complexity of cancer through long-read sequencing
    • Qiuhui Li,
    • Ayse G. Keskus,
    • Justin Wagner,
    • Michal B. Izydorczyk,
    • Winston Timp,
    • Fritz J. Sedlazeck,
    • Alison P. Klein,
    • Justin M. Zook,
    • Mikhail Kolmogorov,
    • and Michael C. Schatz
    Genome Res. April 2025 35: 599-620; Published in Advance March 20, 2025, doi:10.1101/gr.280041.124
    ...liquid biopsy capabilities, allowing for real-time analysis of cfDNA genomic and fragmentomic signatures and the detection of previously unobserved longer cfDNA fragments in cancer patients (van der Pol et al. 2023).New algorithms and tools for long-read somatic variation analysisAnalysis of cancer s...
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  3. Mini-Review: Evolution of genome-wide methylation profiling technologies
    • Carolina Montano and
    • Winston Timp
    Genome Res. April 2025 35: 572-582; doi:10.1101/gr.278407.123
    ...uniform and less biased GC coverage, and even the ability to differentiate between 5mC and 5-hydroxymethylcytosine (5hmC) in some cases.Single moleculeDirect DNA sequencing using long-read sequencing (LRS) platforms like Oxford Nanopore Technologies (ONT) and Pacific Biosciences (PacBio) offers new...
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  4. Method: The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells
    • Mireia Jordà,
    • Anna Díez-Villanueva,
    • Izaskun Mallona,
    • Berta Martín,
    • Sergi Lois,
    • Víctor Barrera,
    • Manel Esteller,
    • Tanya Vavouri,
    • and Miguel A. Peinado
    Genome Res. January 2017 27: 118-132; Published in Advance December 20, 2016, doi:10.1101/gr.207522.116
    ...elements, the most abundant retrotransposon in the human . DNA methylation profiles of Alu repeats have been analyzed in colon cancers and normal tissues using NSUMA and whole- bisulfite sequencing. Normal cells show a low proportion of unmethylated Alu (1%–4%) that may increase up to 10-fold in cancer...
  5. Editorial: Long reads decipher genomes and transcriptomes and offer novel insights into biology and diseases
    • Ana Conesa,
    • Alexander Hoischen,
    • and Fritz J. Sedlazeck
    Genome Res. April 2025 35: xi-xiv; doi:10.1101/gr.280665.125
    .... 2025. Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA. Genome Res (this issue) 35: 644–652. doi:10.1101/gr.279240.124 ↵Horsfield ST, Fok BCT, Fu Y, Turner P, Lees JA, Croucher NJ. 2025. Optimizing nanopore adaptive sampling for pneumococcal serotype...
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