Searching journal content for articles similar to Greller and Tobin 9 (3): 282.

Displaying results 1-10 of 4169

For checked items

view abstracts
download to citation manager

Select this article
Research: ISWI1 complex proteins facilitate developmental genome editing in Paramecium
- Aditi Singh,
- Lilia Häußermann,
- Christiane Emmerich,
- Emily Nischwitz,
- Brandon K.B. Seah,
- Falk Butter,
- Mariusz Nowacki,
- and Estienne C. Swart
Genome Res. January 2025 35: 93-108; Published in Advance November 14, 2024, doi:10.1101/gr.278402.123
...and ICOPb are highly divergent from known proteins; the only domain detected showed distant homology with the WSD (WHIM2 + WHIM3) motif. We show that both ICOPa and ICOPb interact with the chromatin remodeler ISWI1. Upon ICOP knockdown, changes in alternative DNA excision boundaries and nucleosome densities...
OPEN ACCESS ARTICLE
Select this article
Research: Characterization of DNA methylation reader proteins in Arabidopsis thaliana
- Jonathan Cahn,
- James P.B. Lloyd,
- Ino D. Karemaker,
- Pascal W.T.C. Jansen,
- Jahnvi Pflueger,
- Owen Duncan,
- Jakob Petereit,
- Ozren Bogdanovic,
- A. Harvey Millar,
- Michiel Vermeulen,
- and Ryan Lister
Genome Res. December 2024 34: 2229-2243; Published in Advance December 4, 2024, doi:10.1101/gr.279379.124
...examine the similarities and differences of where these seven selected mC reader proteins were binding in the , we merged the peaks from each of the proteins into a nonoverlapping set of regions, which were then clustered based on their ChIP-seq signal for each of the mC reader proteins (Fig. 2E). Five...
Select this article
Research: KRAB zinc-finger proteins regulate endogenous retroviruses to sculpt germline transcriptomes and genome evolution
- Kai Otsuka,
- Akihiko Sakashita,
- So Maezawa,
- Richard M. Schultz,
- and Satoshi H. Namekawa
Genome Res. March 2025 35: 417-431; Published in Advance March 12, 2025, doi:10.1101/gr.279924.124
...that these ERVs also function as enhancers. To test this proposal, from the 1170 ERV loci potentially regulated by KZFPs, we first selected 286 ERV loci based on their transcripts and the adjacent gene transcripts being detected by RNA-seq either in KIT+ SGs or in PSs. Whereas expression of intergenic ERVs...
Select this article
Research: Inference of selective forces on house mouse genomes during secondary contact in East Asia
- Kazumichi Fujiwara,
- Shunpei Kubo,
- Toshinori Endo,
- Toyoyuki Takada,
- Toshihiko Shiroishi,
- Hitoshi Suzuki,
- and Naoki Osada
Genome Res. March 2024 34: 366-375; Published in Advance March 20, 2024, doi:10.1101/gr.278828.123
...observed in southern China.Post-admixture natural selection in the Japanese archipelagoDetecting the signatures of natural selection during genetic admixture is an important yet challenging topic in evolutionary biology. This challenge arises because, following admixture or introgression, it is typically...
OPEN ACCESS ARTICLE
Select this article
Method: Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing
- Yuhong Sun,
- Zhanwen Cheng,
- Xiang Li,
- Qing Yang,
- Bixi Zhao,
- Ziqi Wu,
- and Yu Xia
Genome Res. April 2023 33: 612-621; Published in Advance April 11, 2023, doi:10.1101/gr.277266.122
...) as recommended by other researchers (Weilguny et al. 2023). Despite the largely unaltered community composition (Supplemental Fig. S11), the total reads obtained by selective sequencing might detect different rare taxa as compared to the normal sequencing data set. For the TAD community, compared to normal...
Select this article
Resource: Genetic features and genomic targets of human KRAB-zinc finger proteins
- Jonas de Tribolet-Hardy,
- Christian W. Thorball,
- Romain Forey,
- Evarist Planet,
- Julien Duc,
- Alexandre Coudray,
- Bara Khubieh,
- Sandra Offner,
- Cyril Pulver,
- Jacques Fellay,
- Michael Imbeault,
- Priscilla Turelli,
- and Didier Trono
Genome Res. August 2023 33: 1409-1423; Published in Advance September 20, 2023, doi:10.1101/gr.277722.123
...of selective pressures imposed on its sequence, hence is linked to the relative functional importance of the corresponding protein or protein domain for a given species. Typically, highly constrained coding regions correspond to loci whereas mutations are either associated with disease or are completely absent...
OPEN ACCESS ARTICLE
Select this article
Method: Correcting signal biases and detecting regulatory elements in STARR-seq data
- Young-Sook Kim,
- Graham D. Johnson,
- Jungkyun Seo,
- Alejandro Barrera,
- Thomas N. Cowart,
- William H. Majoros,
- Alejandro Ochoa,
- Andrew S. Allen,
- and Timothy E. Reddy
Genome Res. May 2021 31: 877-889; Published in Advance March 15, 2021, doi:10.1101/gr.269209.120
...to detect potential biologically important sequence signals in the nonoverlapping sets of regulatory elements. Motifs for interferon-responsive transcription factors (TFs) were most strongly enriched in the CRADLE-exclusive repressive elements (Fig. 4F; Supplemental Table S2). In contrast, activator-protein...
OPEN ACCESS ARTICLE
Select this article
Research: Cytosolic and mitochondrial translation elongation are coordinated through the molecular chaperone TRAP1 for the synthesis and import of mitochondrial proteins
- Rosario Avolio,
- Ilenia Agliarulo,
- Daniela Criscuolo,
- Daniela Sarnataro,
- Margherita Auriemma,
- Sabrina De Lella,
- Sara Pennacchio,
- Giovanni Calice,
- Martin Y. Ng,
- Carlotta Giorgi,
- Paolo Pinton,
- Barry S. Cooperman,
- Matteo Landriscina,
- Franca Esposito,
- and Danilo Swann Matassa
Genome Res. August 2023 33: 1242-1257; Published in Advance July 24, 2023, doi:10.1101/gr.277755.123
...of mitochondrial proteins and localized protein synthesis. The results show that TRAP1–GFP induction in HeLa cells increases the number of proximity ligation spots between TOMM20 and actively translating ribosomes, as detected by phosphorylation of the ribosomal protein RPS6 (Fig. 3F). In contrast, TRAP1...
OPEN ACCESS ARTICLE
Select this article
Research: RBFOX splicing factors contribute to a broad but selective recapitulation of peripheral tissue splicing patterns in the thymus
- Kathrin Jansen,
- Noriko Shikama-Dorn,
- Moustafa Attar,
- Stefano Maio,
- Maria Lopopolo,
- David Buck,
- Georg A. Holländer,
- and Stephen N. Sansom
Genome Res. November 2021 31: 2022-2034; Published in Advance October 14, 2021, doi:10.1101/gr.275245.121
...-based transcriptomic census of transcript structures and splicing factor (SF) expression in mouse medullary TEC (mTEC) and 21 peripheral tissues. Mature mTEC expressed 60.1% of all protein-coding transcripts, more than was detected in any of the peripheral tissues. However, for genes with tissue-restricted expression...
OPEN ACCESS ARTICLE
Select this article
Method: Detecting differential copy number variation between groups of samples
- Craig B. Lowe,
- Nicelio Sanchez-Luege,
- Timothy R. Howes,
- Shannon D. Brady,
- Rhea R. Daugherty,
- Felicity C. Jones,
- Michael A. Bell,
- and David M. Kingsley
Genome Res. February 2018 28: 256-265; Published in Advance December 11, 2017, doi:10.1101/gr.206938.116
...show molecular signatures of positive selection in freshwater populations (Chan et al. 2010). Since the split with chimpanzees, humans have deleted enhancers near the androgen receptor gene AR, the bone morphogenetic protein gene GDF6, and the tumor-suppressor gene GADD45G, which have likely...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Greller and Tobin 9 (3): 282.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: