Searching journal content for articles similar to Gordon et al. 11 (4): 614.

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  1. GENOME METHODS: Automated Sequence Preprocessing in a Large-Scale Sequencing Environment
    • Michael C. Wendl,
    • Simon Dear,
    • Dave Hodgson,
    • and LaDeana Hillier
    Genome Res. September 1, 1998 8: 975-984; doi:10.1101/gr.8.9.975
    ...to process reads from several organisms simultaneously and from each stage of sequencing: shotgun, automated finishing, and the final manual finishing phase. An object-oriented approach lends itself well to these requirements. The serial data flow (Fig. 2 ) also suggests a component-based system similar...
  2. LETTER: An intermediate grade of finished genomic sequence suitable for comparative analyses
    • Robert W. Blakesley,
    • Nancy F. Hansen,
    • James C. Mullikin,
    • Pamela J. Thomas,
    • Jennifer C. McDowell,
    • Baishali Maskeri,
    • Alice C. Young,
    • Beatrice Benjamin,
    • Shelise Y. Brooks,
    • Bradley I. Coleman,
    • Jyoti Gupta,
    • Shi-Ling Ho,
    • Eric M. Karlins,
    • Quino L. Maduro,
    • Sirintorn Stantripop,
    • Cyrus Tsurgeon,
    • Jennifer L. Vogt,
    • Michelle A. Walker,
    • Catherine A. Masiello,
    • Xiaobin Guan,
    • NISC Comparative Sequencing Program,
    • Gerard G. Bouffard,
    • and Eric D. Green
    Genome Res. November 2004 14: 2235-2244; Published in Advance October 12, 2004, doi:10.1101/gr.2648404
    ...for the human , which we refer to as human-grade finished sequence, is substantially better than that available at the end of the shotgun phase. The latter full-shotgun draft sequence is simply derived from the automated assembly of the full collection of shotgun sequence reads (e.g., that providing greater...
  3. LETTER: Ancient haplotypes of the HLA Class II region
    • Christopher K. Raymond,
    • Arnold Kas,
    • Marcia Paddock,
    • Ruolan Qiu,
    • Yang Zhou,
    • Sandhya Subramanian,
    • Jean Chang,
    • Anthony Palmieri,
    • Eric Haugen,
    • Rajinder Kaul,
    • and Maynard V. Olson
    Genome Res. September 2005 15: 1250-1257; doi:10.1101/gr.3554305
    ...Res. 10 : 1579 -1586. ↵ Gordon, D., Abajian, C., and Green, P. 1998 . Consed: A graphical tool for sequence finishing. Genome Res. 8 : 195 -202. ↵ Gordon, D., Desmarais, C., and Green, P. 2001 . Automated finishing with autofinish. Genome Res. 11 : 614 -625. ↵ Grahovac, B., Sukernik, R.I., O'hUigin, C...
  4. LETTER: Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex
    • Bárbara Negre,
    • Sònia Casillas,
    • Magali Suzanne,
    • Ernesto Sánchez-Herrero,
    • Michael Akam,
    • Michael Nefedov,
    • Antonio Barbadilla,
    • Pieter de Jong,
    • and Alfredo Ruiz
    Genome Res. May 2005 15: 692-700; doi:10.1101/gr.3468605
    ...., and Green, P. 2001 . Automated finishing with autofinish. Genome Res. 11 : 614 –625. ↵ Halligan, D.L., Eyre-Walker, A., Andolfatto, P., and Keightley, P.D. 2004 . Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res. 14 : 273 –279. ↵ Harris, M.A., Clark, J., Ireland...
  5. LETTER: Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region
    • Naoya Yuhki,
    • Thomas Beck,
    • Robert M. Stephens,
    • Yoko Nishigaki,
    • Kymberly Newmann,
    • and Stephen J. O'Brien
    Genome Res. June 2003 13: 1169-1179; Published in Advance May 12, 2003, doi:10.1101/gr.976103
    ...finishing. Genome Res. 8 : 195 –202. ↵ Gordon, D., Desmarais, C., and Green, P. 2001 . Automated finishing with autofinish. Genome Res. 11 : 614 –625. ↵ Hoover, E.A. and Mullins, J.I. 1991 . Feline leukemia virus infection and diseases. J. Am. Vet. Med. Assoc. 199 : 1287 –1297. ↵ Hughes, A.L. and Yeager, M...
  6. ARTICLE: Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
    • Hidehiro Toh,
    • Brian L. Weiss,
    • Sarah A.H. Perkin,
    • Atsushi Yamashita,
    • Kenshiro Oshima,
    • Masahira Hattori,
    • and Serap Aksoy
    Genome Res. February 2006 16: 149-156; Published in Advance December 19, 2005, doi:10.1101/gr.4106106
    ....R. 2002 . Characterization of the ysa pathogenicity locus in the chromosome of Yersinia enterocolitica and phylogeny analysis of type III secretion systems. J. Mol. Evol. 55 : 37 -51. ↵ Gordon, D., Desmarais, C., and Green, P. 2001 . Automated finishing with autofinish. Genome Res. 11 : 614 -625. ↵ Hacker...
  7. REVIEW: Automation for Genomics, Part Two: Sequencers, Microarrays, and Future Trends
    • Deirdre Meldrum
    Genome Res. September 1, 2000 10: 1288-1303; doi:10.1101/gr.157400
    ...enabled a 43-fold increase in the total finished human genomic sequence in the world in the past four years. This is the second half of a two-part, noncomprehensive review that presents an overview of different types of automation equipment used in genome sequencing. The first part of the review...
  8. ARTICLE: An Evolutionary Analysis of Orphan Genes in Drosophila
    • Tomislav Domazet-Loso and
    • Diethard Tautz
    Genome Res. October 2003 13: 2213-2219; doi:10.1101/gr.1311003
    ...., Abajian, C., and Green, P. 1998 . Consed: A graphical tool for sequence finishing. Genome Res. 8 : 195 -202. ↵ Gordon, D., Desmarais, C., and Green, P. 2001 . Automated finishing with autofinish. Genome Res. 11 : 614 -625. ↵ Green, P., Lipman, D., Hillier, L., Waterston, R., States, D., and Claverie, J...
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