Searching journal content for articles similar to González-Neira et al. 16 (3): 323.

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  1. Resource: Singapore Genome Variation Project: A haplotype map of three Southeast Asian populations
    • Yik-Ying Teo,
    • Xueling Sim,
    • Rick T.H. Ong,
    • Adrian K.S. Tan,
    • Jieming Chen,
    • Erwin Tantoso,
    • Kerrin S. Small,
    • Chee-Seng Ku,
    • Edmund J.D. Lee,
    • Mark Seielstad,
    • and Kee-Seng Chia
    Genome Res. November 2009 19: 2154-2162; Published in Advance August 21, 2009, doi:10.1101/gr.095000.109
    ...that are representative of the target populations to be imputed.While it has been shown that tagging SNPs identified from the HapMap are expected to be portable across other non-African populations (de Bakker et al. 2006; Conrad et al. 2006; Huang et al. 2009), imputation performance is expected to be optimized if local...
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  2. Methods: Genome-wide comparisons of variation in linkage disequilibrium
    • Yik Y. Teo,
    • Andrew E. Fry,
    • Kanishka Bhattacharya,
    • Kerrin S. Small,
    • Dominic P. Kwiatkowski,
    • and Taane G. Clark
    Genome Res. October 2009 19: 1849-1860; Published in Advance June 18, 2009, doi:10.1101/gr.092189.109
    ...; Servin and Stephens 2007). Central to the selection of tag SNPs and the use of HapMap populations as reference panels in imputation is the assumption that patterns of LD are similar between the target and HapMap populations (Clark and Li 2007; Marchini et al. 2007). Population differences in LD structure...
  3. Methods: Intra- and interpopulation genotype reconstruction from tagging SNPs
    • Peristera Paschou,
    • Michael W. Mahoney,
    • Asif Javed,
    • Judith R. Kidd,
    • Andrew J. Pakstis,
    • Sheng Gu,
    • Kenneth K. Kidd,
    • and Petros Drineas
    Genome Res. January 2007 17: 96-107; Published in Advance December 6, 2006, doi:10.1101/gr.5741407
    ...genomic region and enables the design of cost-efficient genetic association studies. Such SNPs are commonly designated as tagging SNPs or tSNPs. This notion motivated the HapMap project, which in phase I has released a public database of 1,000,000 SNPs, typed in four populations from three geographic...
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