Searching journal content for articles similar to Godfrey et al. 30 (6): 860.

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  1. Research: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
    • Kang Du,
    • Oliver Deusch,
    • Ilja Bezrukov,
    • Christa Lanz,
    • Yann Guiguen,
    • Margarete Hoffmann,
    • Anette Habring,
    • Detlef Weigel,
    • Manfred Schartl,
    • and Christine Dreyer
    Genome Res. March 2025 35: 489-498; Published in Advance March 5, 2025, doi:10.1101/gr.279582.124
    .... Genes that control the characteristic color traits could be genetically mapped on the X and Y Chromosomes (Winge 1922; Khoo et al. 1999; Lindholm and Breden 2002; Tripathi et al. 2009a). A genetic map based on EST- and BAC-derived markers was generated, and LG12 was identified as the sex chromosome...
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  2. Research: Evolutionary conservation of Y Chromosome ampliconic gene families despite extensive structural variation
    • Wesley A. Brashear,
    • Terje Raudsepp,
    • and William J. Murphy
    Genome Res. December 2018 28: 1841-1851; Published in Advance October 31, 2018, doi:10.1101/gr.237586.118
    ...ampliconic sequence dispersed across the domestic cat Y Chromosome, and identified the major ampliconic gene families and repeat units. We analyzed fluorescence in situ hybridization, qPCR, and whole- sequence data from 20 cat species and revealed that ampliconic gene families are conserved across the cat...
  3. Method: Efficient identification of Y chromosome sequences in the human and Drosophila genomes
    • Antonio Bernardo Carvalho and
    • Andrew G. Clark
    Genome Res. November 2013 23: 1894-1907; Published in Advance August 6, 2013, doi:10.1101/gr.156034.113
    ...Method Efficient identification of Y chromosome sequences in the human and Drosophila s Antonio Bernardo Carvalho1,2,4 and Andrew G. Clark3 1Departamento de Gene´tica, Universidade Federal do Rio de Janeiro, Caixa Postal 68011, CEP 21941-971, Rio de Janeiro, Brazil; 2Department of Genome Sciences...
  4. Research: The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution
    • Xinghua Li,
    • Judith E. Mank,
    • and Liping Ban
    Genome Res. July 2024 34: 997-1007; Published in Advance August 5, 2024, doi:10.1101/gr.278794.123
    ...than Y Chromosome gene content (Furman et al. 2020). Because the Y Chromosome is completely lost in X0 systems, they represent the ultimate example of sex chromosome heterogamety. Extreme examples are often useful in revealing evolutionary patterns; however, despite their inherent utility for the study...
  5. Research: The Y chromosome as a regulatory element shaping immune cell transcriptomes and susceptibility to autoimmune disease
    • Laure K. Case,
    • Emma H. Wall,
    • Julie A. Dragon,
    • Naresha Saligrama,
    • Dimitry N. Krementsov,
    • Mohamad Moussawi,
    • James F. Zachary,
    • Sally A. Huber,
    • Elizabeth P. Blankenhorn,
    • and Cory Teuscher
    Genome Res. September 2013 23: 1474-1485; Published in Advance June 25, 2013, doi:10.1101/gr.156703.113
    .....org Global gene regulation by the mammalian Y chromosome icant decrease in CVB3-induced myocarditis relative to B6 (Fig. 1D). Residual heart virus titers did not predict the heart score among the strains with the exception of B6–ChrYPWD, which had both significantly lower viral titers (P # 0.05) as well...
  6. Research: Suv39h-catalyzed H3K9me3 is critical for euchromatic genome organization and the maintenance of gene transcription
    • Christine R. Keenan,
    • Hannah D. Coughlan,
    • Nadia Iannarella,
    • Andres Tapia del Fierro,
    • Andrew Keniry,
    • Timothy M. Johanson,
    • Wing Fuk Chan,
    • Alexandra L. Garnham,
    • Lachlan W. Whitehead,
    • Marnie E. Blewitt,
    • Gordon K. Smyth,
    • and Rhys S. Allan
    Genome Res. April 2024 34: 556-571; Published in Advance May 6, 2024, doi:10.1101/gr.279119.124
    ...of ATAC, H3K4me3, H3K27ac, and H3K27me3 logRPKM across gene promoters (2 kbp upstream/500 bp downstream) that are up-regulated (DE Up), down-regulated (DE Down), and non-DE (divided into expressed and nonexpressed genes based on expression level in control cells). Box plots depict the interquartile range...
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  7. Research: Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution
    • Veronica J. Murtagh,
    • Denis O'Meally,
    • Natasha Sankovic,
    • Margaret L. Delbridge,
    • Yoko Kuroki,
    • Jeffrey L. Boore,
    • Atsushi Toyoda,
    • Kristen S. Jordan,
    • Andrew J. Pask,
    • Marilyn B. Renfree,
    • Asao Fujiyama,
    • Jennifer A. Marshall Graves,
    • and Paul D. Waters
    Genome Res. March 2012 22: 498-507; Published in Advance November 29, 2011, doi:10.1101/gr.120790.111
    ...Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution Veronica J. Murtagh 1 , 2 , Denis O'Meally 1 , 3 , Natasha Sankovic 1 , 2 , 4 , Margaret L. Delbridge 1 , 2 , Yoko Kuroki...
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  8. Research: A quantitative framework for characterizing the evolutionary history of mammalian gene expression
    • Jenny Chen,
    • Ross Swofford,
    • Jeremy Johnson,
    • Beryl B. Cummings,
    • Noga Rogel,
    • Kerstin Lindblad-Toh,
    • Wilfried Haerty,
    • Federica di Palma,
    • and Aviv Regev
    Genome Res. January 2019 29: 53-63; Published in Advance December 14, 2018, doi:10.1101/gr.237636.118
    ...no consensus on a quantitative framework for addressing the functional questions related to evolution of expression levels, due in part to a lack of agreement for how to best model expression evolution in mammals. In Drosophila, studies have found that unlike sequence evolution, divergence of gene expression...
  9. Research: Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation
    • Montgomery Blencowe,
    • Xuqi Chen,
    • Yutian Zhao,
    • Yuichiro Itoh,
    • Caden N. McQuillen,
    • Yanjie Han,
    • Benjamin L. Shou,
    • Rebecca McClusky,
    • Karen Reue,
    • Arthur P. Arnold,
    • and Xia Yang
    Genome Res. May 2022 32: 807-824; Published in Advance April 8, 2022, doi:10.1101/gr.275965.121
    ...after gonadectomy in adulthood and represent the effects of permanent or differentiating effects of gonadal hormones, known as “organizational effects,” that form during development. A third class of sex differences are caused by the inequality of action of genes on the X and Y Chromosomes in male (XY...
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  10. Research: An iPSC-based model of 47,XYY Jacobs syndrome reveals a DNA methylation-independent transcriptional dysregulation shared with male X aneuploid cells
    • Veronica Astro,
    • Kelly Yojanna Cardona-Londoño,
    • Lorena Viridiana Cortés-Medina,
    • Rawan Alghamdi,
    • Gustavo Ramírez-Calderón,
    • Fotios Kefalas,
    • Jair Dilmé-Capó,
    • Santiago Radío,
    • and Antonio Adamo
    Genome Res. July 2025 35: 1503-1517; Published in Advance June 10, 2025, doi:10.1101/gr.279716.124
    ...). The shared phenotypic features may stem from the overexpression of genes within the pseudoautosomal region (PAR) 1 and non-PAR X-Y homologs. The PARs are located at the terminal ends of X and Y Chromosomes, spanning ∼2.6 Mb in Xp and Yp (PAR1) and ∼320 kbp in Xq and Yq (PAR2). Genes within PAR1 escape X...
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