Searching journal content for articles similar to Giurgiu et al. 34 (9): 1355.

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  1. Perspective: Unraveling the hidden complexity of cancer through long-read sequencing
    • Qiuhui Li,
    • Ayse G. Keskus,
    • Justin Wagner,
    • Michal B. Izydorczyk,
    • Winston Timp,
    • Fritz J. Sedlazeck,
    • Alison P. Klein,
    • Justin M. Zook,
    • Mikhail Kolmogorov,
    • and Michael C. Schatz
    Genome Res. April 2025 35: 599-620; Published in Advance March 20, 2025, doi:10.1101/gr.280041.124
    ...the increased complexity of the human , particularly in repetitive DNA regions, which could now be more completely and accurately resolved with long-read sequencing.In the decade following, further advances in generating longer, more accurate reads enabled the T2T consortium to achieve the first complete human...
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  2. Method: CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
    • Kaiyuan Zhu,
    • Matthew G. Jones,
    • Jens Luebeck,
    • Xinxin Bu,
    • Hyerim Yi,
    • King L. Hung,
    • Ivy Tsz-Lo Wong,
    • Shu Zhang,
    • Paul S. Mischel,
    • Howard Y. Chang,
    • and Vineet Bafna
    Genome Res. September 2024 34: 1344-1354; Published in Advance July 9, 2024, doi:10.1101/gr.279131.124
    ...the repetitive regions encountered in assembly, such as long interspersed nucleotide elements (LINEs), which are in the 10 kb range. Concurrent with our method proposed below, a new approach, Decoil (Giurgiu et al. 2024), also aims at reconstructing ecDNA structures with long reads. However, it does not separate...
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  3. Editorial: Innovations in computational biology: RECOMB 2024 Special Issue
    • Jian Ma and
    • Bonnie Berger
    Genome Res. September 2024 34: vii-viii; doi:10.1101/gr.280036.124
    ..., Euskirchen P, Koche RP, et al. 2024. Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data using Decoil. Genome Res (this issue) 34: 1355–1364. doi:10.1101/gr.279123.124 ↵Goldenberg M, Mualem L, Shahar A, Snir S, Akavia A. 2024. Privacy-preserving biological age...
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