Searching journal content for articles similar to Gitan et al. 12 (1): 158.

Displaying results 1-10 of 14

For checked items

view abstracts
download to citation manager

Select this article
Methods: Comprehensive high-throughput arrays for relative methylation (CHARM)
- Rafael A. Irizarry,
- Christine Ladd-Acosta,
- Benilton Carvalho,
- Hao Wu,
- Sheri A. Brandenburg,
- Jeffrey A. Jeddeloh,
- Bo Wen,
- and Andrew P. Feinberg
Genome Res. May 2008 18: 780-790; Published in Advance March 3, 2008, doi:10.1101/gr.7301508
...the specificity of three major approaches to high-throughput array-based DNA methylation analysis: (1) MeDIP, or methylated DNA immunoprecipitation, an example of antibody-mediated methyl-specific fractionation; (2) HELP, or HpaII tiny fragment enrichment by ligation-mediated PCR, an example of differential...
OPEN ACCESS ARTICLE
Select this article
Methods: High-throughput DNA methylation profiling using universal bead arrays
- Marina Bibikova,
- Zhenwu Lin,
- Lixin Zhou,
- Eugene Chudin,
- Eliza Wickham Garcia,
- Bonnie Wu,
- Dennis Doucet,
- Neal J. Thomas,
- Yunhua Wang,
- Ekkehard Vollmer,
- Torsten Goldmann,
- Carola Seifart,
- Wei Jiang,
- David L. Barker,
- Mark S. Chee,
- Joanna Floros,
- and Jian-Bing Fan
Genome Res. March 2006 16: 383-393; Published in Advance January 31, 2006, doi:10.1101/gr.4410706
...High-throughput DNA methylation profiling using universal bead arrays Marina Bibikova 1 , Zhenwu Lin 2 , Lixin Zhou 1 , Eugene Chudin 1 , Eliza Wickham Garcia 1 , Bonnie Wu 1 , Dennis Doucet 1 , Neal J. Thomas 3...
OPEN ACCESS ARTICLE
Select this article
Research: Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
- Jung H. Kim,
- Saravana M. Dhanasekaran,
- John R. Prensner,
- Xuhong Cao,
- Daniel Robinson,
- Shanker Kalyana-Sundaram,
- Christina Huang,
- Sunita Shankar,
- Xiaojun Jing,
- Matthew Iyer,
- Ming Hu,
- Lee Sam,
- Catherine Grasso,
- Christopher A. Maher,
- Nallasivam Palanisamy,
- Rohit Mehra,
- Hal D. Kominsky,
- Javed Siddiqui,
- Jindan Yu,
- Zhaohui S. Qin,
- and Arul M. Chinnaiyan
Genome Res. July 2011 21: 1028-1041; doi:10.1101/gr.119347.110
...provides vital information on genomic locations of cancer-specific DMRs that may now facilitate high-throughput screening analyses for prostate cancer disease markers. Moreover, future -wide analyses of DNA methylation may improve with larger patient sample sets and with the incorporation ofmultiple...
Select this article
Method: Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples
- Katherine Elena Varley and
- Robi David Mitra
Genome Res. September 2010 20: 1279-1287; Published in Advance July 13, 2010, doi:10.1101/gr.101212.109
....MethyLight: A high-throughput assay to measure DNA methylation. Nucleic Acids Res 28: e32. http:// nar.oxfordjournals.org/cgi/content/abstract/28/8/e32. Ehrich M, Nelson MR, Stanssens P, Zabeau M, Liloglou T, Xinarianos G, Cantor CR, Field JK, van den Boom D. 2005. Quantitative highthroughput analysis...
Select this article
Next-Generation DNA Sequencing/Review: Finding the fifth base: Genome-wide sequencing of cytosine methylation
- Ryan Lister and
- Joseph R. Ecker
Genome Res. June 2009 19: 959-966; Published in Advance March 9, 2009, doi:10.1101/gr.083451.108
...such complex processes. In this review we discuss new approaches being used to identify sites of cytosine methylation throughout s that have been made possible by rapid advances in high-throughput DNA sequencing and discuss some of the challenges encountered and that lie ahead. Initial studies of single...
Select this article
Letter: Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus
- Biola M. Javierre,
- Agustin F. Fernandez,
- Julia Richter,
- Fatima Al-Shahrour,
- J. Ignacio Martin-Subero,
- Javier Rodriguez-Ubreva,
- Maria Berdasco,
- Mario F. Fraga,
- Terrance P. O'Hanlon,
- Lisa G. Rider,
- Filipe V. Jacinto,
- F. Javier Lopez-Longo,
- Joaquin Dopazo,
- Marta Forn,
- Miguel A. Peinado,
- Luis Carreño,
- Amr H. Sawalha,
- John B. Harley,
- Reiner Siebert,
- Manel Esteller,
- Frederick W. Miller,
- and Esteban Ballestar
Genome Res. February 2010 20: 170-179; Published in Advance December 22, 2009, doi:10.1101/gr.100289.109
.... In autoimmune diseases, environmentally driven epigenetic changes are thought to contribute to their etiology. Here we report the first high-throughput and candidate sequence analyses of DNA methylation to investigate discordance for autoimmune disease in twins. We used a cohort of MZ twins discordant for three...
Select this article
Methods: Comparative isoschizomer profiling of cytosine methylation: The HELP assay
- Batbayar Khulan,
- Reid F. Thompson,
- Kenny Ye,
- Melissa J. Fazzari,
- Masako Suzuki,
- Edyta Stasiek,
- Maria E. Figueroa,
- Jacob L. Glass,
- Quan Chen,
- Cristina Montagna,
- Eli Hatchwell,
- Rebecca R. Selzer,
- Todd A. Richmond,
- Roland D. Green,
- Ari Melnick,
- and John M. Greally
Genome Res. August 2006 16: 1046-1055; Published in Advance June 29, 2006, doi:10.1101/gr.5273806
...I representation provides a robust control with which to compare the HpaII representation. The HELP assay can be used on any genomic microarray and with any combination of restriction enzyme isoschizomers differing in sensitivity to cytosine methylation of the target sequence. By using a customized oligonucleotide...
Select this article
Methods: Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion
- Jon Reinders,
- Céline Delucinge Vivier,
- Grégory Theiler,
- Didier Chollet,
- Patrick Descombes,
- and Jerzy Paszkowski
Genome Res. March 2008 18: 469-476; Published in Advance January 24, 2008, doi:10.1101/gr.7073008
....L. , Paul, C.L. ( 1992 ) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands . Proc. Natl. Acad. Sci. 89 : 1827 – 1831 . ↵ Gitan, R.S. , Shi, H. , Chen, C.M. , Yan, P.S. , Huang, T.H. ( 2002 ) Methylation-specific oligonucleotide microarray...
Select this article
Methods: Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay
- Yu-Wei Cheng,
- Carrie Shawber,
- Dan Notterman,
- Philip Paty,
- and Francis Barany
Genome Res. February 2006 16: 282-289; Published in Advance December 20, 2005, doi:10.1101/gr.4181406
...for multiplex detection of low abundance point mutations. J. Mol. Biol. 292 : 251 -262. ↵ Gitan, R.S., Shi, H., Chen, C.M., Yan, P.S., and Huang, T.H. 2002 . Methylation-specific oligonucleotide microarray: A new potential for high-throughput methylation analysis. Genome Res. 12 : 158 -164. ↵ Gonzalgo, M...
Select this article
Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...approaches preceding the availability of structural data. PWM-based predictions depend on databases like TRANSFAC (Matys et al. 2006) and JASPAR (Khan et al. 2018). Modern high-throughput techniques that experimentally identify protein–DNA binding, such as ChIP-seq, SELEX, and protein-binding microarrays...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Gitan et al. 12 (1): 158.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: